Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1002489	0.92[ASN][1000 genomes]
rs12489252	0.81[AMR][1000 genomes]
rs12494669	0.99[ASN][1000 genomes]
rs12495732	0.92[ASN][1000 genomes]
rs12638888	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13062392	0.92[ASN][1000 genomes]
rs1440387	0.81[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.81[ASN][1000 genomes]
rs1561594	0.99[ASN][1000 genomes]
rs1583821	0.97[ASN][1000 genomes]
rs1899082	0.96[ASN][1000 genomes]
rs2099753	0.92[ASN][1000 genomes]
rs2218183	0.92[ASN][1000 genomes]
rs4044970	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4678459	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4678651	0.89[ASN][1000 genomes]
rs6801432	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7614971	0.97[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7630218	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7631478	0.90[ASN][1000 genomes]
rs7633784	0.89[ASN][1000 genomes]
rs7641622	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7643151	0.91[ASN][1000 genomes]
rs7653017	0.81[AMR][1000 genomes]
rs893923	0.92[ASN][1000 genomes]
rs9835388	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9852942	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34170200-34174800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:34171400-34174600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:34171800-34173400	Weak transcription	Dnd41	blood
4	chr3:34172200-34173200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:34172200-34173600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:34172400-34173200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:34172400-34175600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:34172600-34173600	Weak transcription	Fetal Thymus	thymus

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