Variant report

Variant	rs1441417
Chromosome Location	chr4:143756634-143756635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143395153..143399388-chr4:143754064..143757288,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1031104	1.00[CHB][hapmap]
rs10519666	0.86[ASN][1000 genomes]
rs10857399	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs11100761	0.86[ASN][1000 genomes]
rs11736709	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11943397	0.90[CHB][hapmap]
rs13112916	0.81[ASN][1000 genomes]
rs13122287	0.88[ASN][1000 genomes]
rs13145724	0.81[ASN][1000 genomes]
rs1441411	0.94[ASN][1000 genomes]
rs1441418	0.86[ASN][1000 genomes]
rs1443187	1.00[CHB][hapmap]
rs1444949	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1444950	0.86[ASN][1000 genomes]
rs17016768	0.90[CHB][hapmap]
rs17732791	0.86[ASN][1000 genomes]
rs1899565	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs1992417	0.86[ASN][1000 genomes]
rs1992418	0.86[ASN][1000 genomes]
rs1992652	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2120158	0.90[CHB][hapmap]
rs2218240	0.81[ASN][1000 genomes]
rs331945	0.90[CHB][hapmap]
rs34831472	0.86[ASN][1000 genomes]
rs4575951	0.81[ASN][1000 genomes]
rs4690728	0.81[ASN][1000 genomes]
rs4690729	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4690730	0.86[CEU][hapmap]
rs58445560	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60263370	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6537129	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6537130	0.81[ASN][1000 genomes]
rs6811022	0.86[ASN][1000 genomes]
rs6822703	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6823627	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6828896	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6830053	0.91[CHB][hapmap]
rs6831204	0.84[ASN][1000 genomes]
rs6838663	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6839158	1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs6846609	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72728686	0.86[ASN][1000 genomes]
rs72728694	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72728700	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72730409	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73850583	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7656375	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7660533	0.86[ASN][1000 genomes]
rs7663475	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7666140	0.90[CHB][hapmap]
rs7668552	0.86[ASN][1000 genomes]
rs7668786	0.86[ASN][1000 genomes]
rs7670139	0.81[ASN][1000 genomes]
rs7679151	0.81[ASN][1000 genomes]
rs7685997	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs978361	0.90[CHB][hapmap]
rs9994364	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143740200-143765800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143750600-143760000	Weak transcription	Left Ventricle	heart
3	chr4:143750800-143762200	Weak transcription	Fetal Heart	heart
4	chr4:143753800-143761000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:143756000-143757200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:143756600-143758800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:143756600-143761000	Weak transcription	Dnd41	blood

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