Variant report

Variant	rs144144219
Chromosome Location	chr2:210552285-210552286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:210552176-210552769	H1-neurons	neurons:	n/a	n/a
2	FOS	chr2:210552081-210552287	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr2:210552026-210552318	MCF10A-Er-Src	breast:	n/a	chr2:210552045-210552052
4	FOS	chr2:210552030-210552310	MCF10A-Er-Src	breast:	n/a	chr2:210552045-210552052
5	POLR2A	chr2:210552121-210552952	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:210552164..210552796-chr6:157542121..157542793,2	HCT-116	colon:

Variant related genes	Relation type
MAP2	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875765	chr2:210537660-210618203	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210531400-210587800	Weak transcription	Brain Angular Gyrus	brain
2	chr2:210537000-210596800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:210541800-210596400	Weak transcription	Gastric	stomach
4	chr2:210542000-210555400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:210544000-210596600	Weak transcription	Ovary	ovary
6	chr2:210544200-210555200	Weak transcription	Left Ventricle	heart
7	chr2:210544400-210598600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr2:210546200-210552400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:210546400-210554800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr2:210546800-210560000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:210549200-210559600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:210550400-210552800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:210550800-210552800	Enhancers	NHDF-Ad	bronchial
14	chr2:210550800-210557400	Weak transcription	Brain Anterior Caudate	brain
15	chr2:210550800-210557400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr2:210551000-210552600	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr2:210551400-210552600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr2:210551400-210553600	Enhancers	HMEC	breast
19	chr2:210551400-210557600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr2:210551400-210561400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr2:210551600-210552600	Genic enhancers	Brain Germinal Matrix	brain
22	chr2:210551600-210552800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:210551800-210552600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr2:210551800-210552600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr2:210552000-210552400	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr2:210552000-210552800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr2:210552000-210553000	Genic enhancers	Fetal Brain Female	brain
28	chr2:210552000-210553400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr2:210552200-210552600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr2:210552200-210552600	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr2:210552200-210552600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr2:210552200-210552600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr2:210552200-210552800	Enhancers	H1 Cell Line	embryonic stem cell
34	chr2:210552200-210552800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr2:210552200-210552800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr2:210552200-210552800	Strong transcription	Aorta	Aorta
37	chr2:210552200-210552800	Enhancers	Fetal Brain Male	brain
38	chr2:210552200-210552800	Genic enhancers	Pancreas	Pancrea
39	chr2:210552200-210553000	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr2:210552200-210553000	Enhancers	NHEK	skin

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