Variant report

Variant	rs144182021
Chromosome Location	chr5:59947183-59947184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:59946051-59947204	K562	blood:	n/a	n/a
2	POLR2A	chr5:59947171-59947185	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:59942675..59945605-chr5:59945905..59947831,2	K562	blood:

Variant related genes	Relation type
DEPDC1B	TF binding region
ENSG00000035499	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv492277	chr5:59905195-60180834	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv968916	chr5:59944877-59962647	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv436477	chr5:59946381-59952080	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59920600-59947800	Weak transcription	HUVEC	blood vessel
2	chr5:59925200-59947200	Weak transcription	Pancreas	Pancrea
3	chr5:59926400-59967800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:59929400-59947400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:59929400-59954600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:59929600-59948000	Weak transcription	NHEK	skin
7	chr5:59933400-59965200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:59933600-59981000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:59934800-59947600	Weak transcription	HMEC	breast
10	chr5:59936600-59961400	Weak transcription	Thymus	Thymus
11	chr5:59936800-59961800	Weak transcription	Fetal Thymus	thymus
12	chr5:59940400-59947800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:59940400-59947800	Weak transcription	HSMM	muscle
14	chr5:59940600-59947400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr5:59940600-59947600	Weak transcription	A549	lung
16	chr5:59940600-59948000	Weak transcription	K562	blood
17	chr5:59940600-59950200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr5:59941000-59947200	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr5:59941200-59947600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr5:59942600-59947400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr5:59942800-59952000	Weak transcription	Dnd41	blood
22	chr5:59942800-59961600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:59943400-59947600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:59943400-59947800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr5:59943400-59952400	Weak transcription	Placenta	Placenta
26	chr5:59943400-59977000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr5:59943800-59952600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:59944400-59952400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr5:59945000-59961800	Weak transcription	HepG2	liver
30	chr5:59946400-59952400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:59946800-59947800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr5:59947000-59947800	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links