Variant report

Variant	rs1443185
Chromosome Location	chr4:143633841-143633842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143629918..143632766-chr4:143633001..143634713,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10024696	0.88[EUR][1000 genomes]
rs10857397	0.83[ASN][1000 genomes]
rs10857399	0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11100754	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11100760	0.84[EUR][1000 genomes]
rs11723809	0.83[ASN][1000 genomes]
rs11933763	0.84[EUR][1000 genomes]
rs11943397	0.83[ASN][1000 genomes]
rs12233703	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12640389	0.88[EUR][1000 genomes]
rs12644329	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13114452	0.83[ASN][1000 genomes]
rs13117185	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13125853	0.81[ASN][1000 genomes]
rs13141925	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13435565	0.91[EUR][1000 genomes]
rs1364921	0.81[ASN][1000 genomes]
rs1373031	0.88[EUR][1000 genomes]
rs1373032	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1443183	0.88[EUR][1000 genomes]
rs1443186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443187	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1443191	0.83[ASN][1000 genomes]
rs1465962	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17016777	0.87[EUR][1000 genomes]
rs179508	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1822360	0.88[EUR][1000 genomes]
rs1822361	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1838082	0.88[EUR][1000 genomes]
rs1867214	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1899565	0.83[ASN][1000 genomes]
rs191762	0.93[EUR][1000 genomes]
rs1961836	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1965828	0.88[EUR][1000 genomes]
rs2017146	0.81[ASN][1000 genomes]
rs2083781	0.80[ASN][1000 genomes]
rs2120158	0.83[ASN][1000 genomes]
rs2165819	0.81[AMR][1000 genomes]
rs2165820	0.83[ASN][1000 genomes]
rs2197216	0.82[ASN][1000 genomes]
rs2589994	0.88[EUR][1000 genomes]
rs28420913	0.91[EUR][1000 genomes]
rs331939	0.88[EUR][1000 genomes]
rs331940	0.87[EUR][1000 genomes]
rs331942	0.88[EUR][1000 genomes]
rs331948	0.95[EUR][1000 genomes]
rs331949	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs331950	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs331957	0.89[EUR][1000 genomes]
rs331963	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs331966	0.89[EUR][1000 genomes]
rs34442253	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4690698	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4690699	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4690726	0.88[EUR][1000 genomes]
rs6537123	0.80[ASN][1000 genomes]
rs6537124	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6537127	0.85[EUR][1000 genomes]
rs6813458	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6816424	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6819498	0.91[EUR][1000 genomes]
rs6831927	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6844306	0.91[EUR][1000 genomes]
rs6845583	0.91[EUR][1000 genomes]
rs6852570	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7376475	0.85[EUR][1000 genomes]
rs7667183	0.87[EUR][1000 genomes]
rs966457	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143620800-143642000	Weak transcription	Fetal Heart	heart
2	chr4:143625200-143641600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:143629600-143634000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr4:143629800-143634400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr4:143630200-143640600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr4:143630800-143650200	Weak transcription	Aorta	Aorta
7	chr4:143631400-143636800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr4:143631800-143636600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:143632200-143634000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr4:143632200-143634000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr4:143632200-143634200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr4:143632200-143634800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:143632400-143634000	Weak transcription	Dnd41	blood
14	chr4:143632400-143640200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:143632600-143634000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr4:143633400-143636800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr4:143633800-143636400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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