Variant report

Variant	rs1443191
Chromosome Location	chr4:143543336-143543337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143387939..143398265-chr4:143528932..143544358,55	MCF-7	breast:
2	chr4:143395685..143398637-chr4:143542900..143544725,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1031104	0.86[ASN][1000 genomes]
rs10857397	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857399	0.81[JPT][hapmap]
rs11100754	0.82[ASN][1000 genomes]
rs1116690	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11723809	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942731	0.86[YRI][hapmap]
rs11943397	0.83[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11944455	0.84[CHB][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12500698	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12508480	0.81[ASN][1000 genomes]
rs12644329	0.82[ASN][1000 genomes]
rs13102191	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13109603	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13109664	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13114452	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13119090	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13125362	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13125853	0.98[ASN][1000 genomes]
rs13133181	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1364921	0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1364922	0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1364923	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1364925	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1373032	0.81[ASN][1000 genomes]
rs1373041	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1443185	0.83[ASN][1000 genomes]
rs1443186	0.83[ASN][1000 genomes]
rs1443187	0.81[ASN][1000 genomes]
rs1473222	0.93[CHB][hapmap];0.82[AMR][1000 genomes]
rs1899565	0.83[CEU][hapmap];0.87[JPT][hapmap];0.82[YRI][hapmap];0.94[ASN][1000 genomes]
rs2017146	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2083781	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2120158	0.83[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2165820	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2197216	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2217017	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2874870	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2874871	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4690699	0.81[ASN][1000 genomes]
rs4975311	0.93[CHB][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61371792	0.84[ASN][1000 genomes]
rs6537123	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6830053	0.86[ASN][1000 genomes]
rs6830886	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6831966	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6839894	0.82[CHB][hapmap];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7434705	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7437824	0.81[ASN][1000 genomes]
rs7441478	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7680076	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7680631	0.86[ASN][1000 genomes]
rs7695514	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7698691	0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs979194	0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs979195	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs979196	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143537000-143575800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143538600-143543800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:143538800-143548800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:143539800-143544000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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