Variant report

Variant	rs1444261
Chromosome Location	chr2:55354466-55354467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55347589..55350399-chr2:55353012..55356550,3	K562	blood:
2	chr2:55354045..55358992-chr2:55359264..55362961,10	K562	blood:
3	chr2:55317491..55320389-chr2:55353097..55355543,2	K562	blood:
4	chr2:55354045..55357806-chr2:55359264..55361491,4	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2920845	1.00[AFR][1000 genomes]
rs2920848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2920849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2920852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2920853	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2968784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2968785	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2968803	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2972061	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4268958	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4530400	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4672021	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6708596	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6718927	0.85[ASN][1000 genomes]
rs6747682	1.00[ASW][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1444261	FLJ31438	cis	multi-tissue	Pritchard

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55347600-55360600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:55348200-55360600	Weak transcription	Stomach Mucosa	stomach
3	chr2:55348400-55360400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:55348600-55360800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:55348800-55360400	Weak transcription	NHDF-Ad	bronchial
6	chr2:55349800-55360600	Weak transcription	Fetal Stomach	stomach
7	chr2:55350000-55355200	Weak transcription	Fetal Muscle Leg	muscle
8	chr2:55350000-55360600	Weak transcription	Psoas Muscle	Psoas
9	chr2:55350000-55360800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:55350000-55360800	Weak transcription	Lung	lung
11	chr2:55350000-55360800	Weak transcription	Ovary	ovary
12	chr2:55350200-55355200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:55350200-55356400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr2:55351200-55359600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr2:55351400-55360600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr2:55351400-55360600	Weak transcription	HSMMtube	muscle
17	chr2:55351600-55354600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr2:55351600-55360400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr2:55351800-55354600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr2:55351800-55354600	Weak transcription	Brain Substantia Nigra	brain
21	chr2:55354400-55354800	Enhancers	Brain Angular Gyrus	brain
22	chr2:55354400-55355800	Enhancers	Brain Hippocampus Middle	brain
23	chr2:55354400-55356800	Enhancers	K562	blood

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