Variant report

Variant	rs1446036
Chromosome Location	chr5:16129560-16129561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10051368	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10051545	0.86[EUR][1000 genomes]
rs10059842	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10059919	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10068941	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10070121	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10074672	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10475073	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13354280	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13354758	1.00[EUR][1000 genomes]
rs1446032	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2100041	0.83[AMR][1000 genomes]
rs2121182	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3933641	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9312903	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9312905	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9312906	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16128200-16135400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:16128600-16129600	Active TSS	Left Ventricle	heart
3	chr5:16128800-16132600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:16129000-16132400	Active TSS	Right Ventricle	heart
5	chr5:16129200-16131800	Active TSS	Fetal Heart	heart
6	chr5:16129400-16130000	Active TSS	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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