Variant report

Variant	rs144609275
Chromosome Location	chr13:96486375-96486376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:96275906..96276854-chr13:96486114..96486980,5	K562	blood:
2	chr13:96275895..96276755-chr13:96486107..96487061,4	MCF-7	breast:
3	chr13:96275890..96276432-chr13:96486160..96486773,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3509289	chr13:96461000-96505090	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3509290	chr13:96461000-96505090	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832691	chr13:96478098-96659823	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv527566	chr13:96485609-96497070	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96445800-96490000	Weak transcription	HepG2	liver
2	chr13:96452000-96490600	Weak transcription	Fetal Kidney	kidney
3	chr13:96467400-96490800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr13:96468200-96489800	Weak transcription	GM12878-XiMat	blood
5	chr13:96476000-96502600	Weak transcription	Fetal Heart	heart
6	chr13:96476400-96489800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr13:96478000-96498200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:96478000-96502600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:96478000-96502600	Weak transcription	Left Ventricle	heart
10	chr13:96478000-96568400	Weak transcription	Placenta	Placenta
11	chr13:96478200-96486400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr13:96478200-96489200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr13:96478200-96489800	Weak transcription	Fetal Intestine Large	intestine
14	chr13:96478200-96489800	Weak transcription	Fetal Muscle Leg	muscle
15	chr13:96478200-96490000	Weak transcription	Brain Hippocampus Middle	brain
16	chr13:96478200-96490400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr13:96478200-96490400	Weak transcription	Liver	Liver
18	chr13:96478200-96490600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr13:96478200-96493600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr13:96478200-96495000	Weak transcription	Lung	lung
21	chr13:96478200-96502200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr13:96478200-96502600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr13:96478200-96502600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr13:96478200-96502600	Weak transcription	Aorta	Aorta
25	chr13:96478200-96502600	Weak transcription	Fetal Stomach	stomach
26	chr13:96478200-96502600	Weak transcription	Gastric	stomach
27	chr13:96478200-96502600	Weak transcription	Ovary	ovary
28	chr13:96478600-96491400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr13:96479800-96489600	Weak transcription	Fetal Intestine Small	intestine
30	chr13:96480400-96488600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr13:96485200-96486600	Enhancers	Muscle Satellite Cultured Cells	--
32	chr13:96485400-96486400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr13:96485400-96486400	Enhancers	A549	lung
34	chr13:96485400-96486600	Enhancers	NHEK	skin
35	chr13:96485400-96488600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr13:96485600-96486400	Enhancers	Brain Cingulate Gyrus	brain
37	chr13:96485600-96486400	Enhancers	Hela-S3	cervix
38	chr13:96485600-96486400	Enhancers	NHDF-Ad	bronchial
39	chr13:96485600-96486400	Enhancers	Osteobl	bone
40	chr13:96485600-96486600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr13:96485600-96486600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr13:96485600-96486600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr13:96485600-96486600	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr13:96485600-96486600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr13:96485600-96486600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr13:96485600-96486600	Enhancers	HMEC	breast
47	chr13:96485800-96486400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
48	chr13:96485800-96486400	Enhancers	Primary hematopoietic stem cells	blood
49	chr13:96485800-96486400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr13:96485800-96486600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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