Variant report

Variant	rs1447738
Chromosome Location	chr3:143387743-143387744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1242050	0.85[AMR][1000 genomes]
rs1242056	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1261719	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1530650	0.83[ASW][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1900632	0.85[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7627046	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7644727	0.85[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs9819087	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9846987	0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143367400-143390400	Weak transcription	Brain Substantia Nigra	brain
2	chr3:143370400-143390400	Weak transcription	Fetal Lung	lung
3	chr3:143370800-143420800	Weak transcription	Primary T cells from cord blood	blood
4	chr3:143386600-143389600	Enhancers	Primary B cells from peripheral blood	blood
5	chr3:143387200-143389400	Enhancers	Primary B cells from cord blood	blood
6	chr3:143387400-143388000	Enhancers	Duodenum Mucosa	Duodenum
7	chr3:143387400-143388200	Enhancers	Fetal Stomach	stomach
8	chr3:143387400-143388800	Flanking Active TSS	GM12878-XiMat	blood
9	chr3:143387400-143389400	Enhancers	Dnd41	blood
10	chr3:143387400-143390000	Enhancers	Thymus	Thymus
11	chr3:143387400-143390800	Enhancers	Fetal Thymus	thymus
12	chr3:143387600-143388000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:143387600-143393000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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