Variant report

Variant	rs1448559
Chromosome Location	chr2:33816806-33816807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:33811725..33814089-chr2:33815485..33818226,3	K562	blood:
2	chr2:33813884..33820375-chr2:33821086..33825904,10	K562	blood:
3	chr2:33810285..33812123-chr2:33814642..33817404,2	MCF-7	breast:
4	chr2:33814233..33816944-chr2:33823198..33825061,2	K562	blood:

Variant related genes	Relation type
ENSG00000119812	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10168254	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10173763	0.95[CEU][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes]
rs10197783	0.95[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs11066	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1375198	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1375199	0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[ASN][1000 genomes]
rs2367811	0.89[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs3023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6708570	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6718639	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6740336	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6757234	0.90[JPT][hapmap]
rs723241	0.90[JPT][hapmap]
rs723242	0.80[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1448559	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33802200-33823600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:33803800-33822200	Weak transcription	Right Atrium	heart
3	chr2:33807000-33818200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr2:33807000-33820600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:33807400-33817600	Weak transcription	Fetal Brain Male	brain
6	chr2:33807600-33821000	Strong transcription	NH-A	brain
7	chr2:33807800-33822800	Weak transcription	Stomach Mucosa	stomach
8	chr2:33808200-33820600	Strong transcription	Dnd41	blood
9	chr2:33808400-33822600	Weak transcription	Fetal Heart	heart
10	chr2:33808600-33818800	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr2:33808600-33820200	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr2:33808600-33820400	Strong transcription	Primary B cells from peripheral blood	blood
13	chr2:33808600-33820400	Strong transcription	HUVEC	blood vessel
14	chr2:33808600-33820600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr2:33808600-33820800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr2:33808600-33821000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr2:33808800-33820400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr2:33808800-33820400	Strong transcription	Fetal Intestine Large	intestine
19	chr2:33808800-33820800	Strong transcription	Duodenum Mucosa	Duodenum
20	chr2:33808800-33820800	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr2:33809000-33820200	Strong transcription	Primary B cells from cord blood	blood
22	chr2:33809000-33820200	Strong transcription	Primary T cells from cord blood	blood
23	chr2:33809000-33820200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr2:33809000-33820200	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr2:33809000-33820600	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr2:33809200-33820800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr2:33809200-33823400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr2:33809400-33820200	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr2:33810000-33820800	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr2:33810400-33817200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr2:33810400-33818000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr2:33810400-33820000	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr2:33810600-33817200	Weak transcription	Pancreas	Pancrea
34	chr2:33810600-33817400	Weak transcription	Esophagus	oesophagus
35	chr2:33810600-33817600	Weak transcription	Spleen	Spleen
36	chr2:33810600-33818800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr2:33810800-33822200	Weak transcription	Gastric	stomach
38	chr2:33810800-33822200	Weak transcription	Right Ventricle	heart
39	chr2:33811000-33817400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr2:33811000-33817600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr2:33811000-33817800	Weak transcription	Colonic Mucosa	Colon
42	chr2:33811000-33818000	Weak transcription	Aorta	Aorta
43	chr2:33811000-33822200	Weak transcription	Small Intestine	intestine
44	chr2:33811200-33817200	Weak transcription	Fetal Intestine Small	intestine
45	chr2:33812000-33823400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr2:33812200-33817600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr2:33812600-33817400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr2:33812800-33817200	Weak transcription	Brain Germinal Matrix	brain
49	chr2:33812800-33817600	Weak transcription	Lung	lung
50	chr2:33812800-33817600	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links