Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:63460557..63464454-chr8:63467643..63469936,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1031399	0.95[ASN][1000 genomes]
rs1351365	0.87[EUR][1000 genomes]
rs1383193	0.98[ASN][1000 genomes]
rs1383194	0.98[ASN][1000 genomes]
rs1480186	0.82[AFR][1000 genomes]
rs1531657	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1842353	0.92[ASN][1000 genomes]
rs2127577	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2620876	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2957797	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2957799	0.98[ASN][1000 genomes]
rs4483149	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7844749	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs827683	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs827684	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs827687	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs827699	0.98[ASN][1000 genomes]
rs827705	0.95[ASN][1000 genomes]
rs827707	0.95[ASN][1000 genomes]
rs862386	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs936620	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831339	chr8:63312449-63501127	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv890959	chr8:63449156-63515522	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2761431	chr8:63458672-63467199	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63459800-63465400	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:63461800-63465200	Weak transcription	Fetal Brain Male	brain
3	chr8:63462800-63463800	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search: