Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10429947	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs10779632	0.87[CHB][hapmap];0.85[CHD][hapmap]
rs10864142	0.88[EUR][1000 genomes]
rs11120459	0.99[EUR][1000 genomes]
rs11802559	0.99[EUR][1000 genomes]
rs12047560	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs12079267	0.96[EUR][1000 genomes]
rs12084891	0.88[EUR][1000 genomes]
rs12116663	0.97[EUR][1000 genomes]
rs12131195	0.82[ASN][1000 genomes]
rs1349672	0.81[CHB][hapmap]
rs1452634	0.87[CHB][hapmap];0.90[CHD][hapmap]
rs1452635	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2601649	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2841617	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs570147	0.87[ASN][1000 genomes]
rs6662428	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6679757	0.88[EUR][1000 genomes]
rs7538655	0.93[CHB][hapmap];0.81[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs896653	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215164200-215174800	Weak transcription	NH-A	brain
2	chr1:215164800-215175000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:215167400-215174600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215168000-215174800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:215172800-215174600	Weak transcription	Osteobl	bone
6	chr1:215174000-215174800	Enhancers	GM12878-XiMat	blood

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