Variant report

Variant	rs1452886
Chromosome Location	chr12:45022960-45022961
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10506251	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10506252	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10880664	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11182546	0.80[ASN][1000 genomes]
rs11182547	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs11182553	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11182554	0.95[ASN][1000 genomes]
rs11182555	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11182558	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11182561	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11182564	0.95[ASN][1000 genomes]
rs11182565	0.95[ASN][1000 genomes]
rs11182566	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11182567	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182570	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11182571	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11182573	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182574	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11182575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182576	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11182577	0.95[ASN][1000 genomes]
rs11182578	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182582	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182583	0.95[ASN][1000 genomes]
rs11182584	0.95[ASN][1000 genomes]
rs11182585	0.95[ASN][1000 genomes]
rs11182587	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11182589	0.95[ASN][1000 genomes]
rs11182591	0.95[ASN][1000 genomes]
rs11182593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11182594	0.85[ASN][1000 genomes]
rs11182600	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11182601	0.85[ASN][1000 genomes]
rs11182602	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11182605	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11182606	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11182609	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11182610	0.82[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs11182611	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11182613	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11182614	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11182615	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11182616	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11182619	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11182623	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11182646	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11182652	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11182653	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11531203	0.85[ASN][1000 genomes]
rs11612950	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11613236	0.97[EUR][1000 genomes]
rs11615599	0.90[EUR][1000 genomes]
rs12227198	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12227809	1.00[JPT][hapmap]
rs12228891	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12229413	0.95[ASN][1000 genomes]
rs12229463	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12230951	0.85[ASN][1000 genomes]
rs17094881	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17094886	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17094892	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17094988	1.00[JPT][hapmap]
rs17571971	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17572590	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17572765	1.00[EUR][1000 genomes]
rs17574492	1.00[CEU][hapmap]
rs17574839	0.87[CEU][hapmap]
rs17575480	0.87[CEU][hapmap]
rs17649873	0.97[EUR][1000 genomes]
rs17650849	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17651646	1.00[CEU][hapmap]
rs17652715	1.00[CEU][hapmap]
rs17653092	1.00[CEU][hapmap]
rs2408044	1.00[CEU][hapmap]
rs4768068	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768069	0.84[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768070	1.00[EUR][1000 genomes]
rs4768561	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs4768566	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4768570	0.87[CEU][hapmap]
rs59098139	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61671085	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6582510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6582511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6582512	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7135950	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7305652	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73284070	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73284080	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74081513	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74081517	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74081519	0.83[AFR][1000 genomes]
rs7955981	1.00[CEU][hapmap]
rs7957292	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7961698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7966845	0.97[EUR][1000 genomes]
rs7967221	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7974472	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7976217	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7978549	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3378050	chr12:44963059-45264289	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv430506	chr12:45003342-45072343	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44998200-45024400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:45004800-45034800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr12:45004800-45043200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr12:45005000-45023200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr12:45005000-45031200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr12:45005000-45044200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr12:45015000-45048400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:45019600-45024200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr12:45021400-45031000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:45022400-45031200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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