Variant report

Variant	rs1454127
Chromosome Location	chr7:124878429-124878430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:124878093..124880264-chr7:124889805..124892447,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1086958	0.96[EUR][1000 genomes]
rs1086960	0.94[EUR][1000 genomes]
rs1086961	0.96[EUR][1000 genomes]
rs1086962	0.96[EUR][1000 genomes]
rs1086963	0.96[EUR][1000 genomes]
rs11764907	0.84[AFR][1000 genomes]
rs11767601	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11770207	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11770707	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11770950	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13225764	0.94[EUR][1000 genomes]
rs13227708	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13244183	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13245366	0.90[EUR][1000 genomes]
rs13245575	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34994341	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35520986	0.96[EUR][1000 genomes]
rs35850803	0.83[AFR][1000 genomes]
rs35884877	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36038504	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57553642	0.96[EUR][1000 genomes]
rs57954112	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs591396	0.85[CEU][hapmap]
rs62477078	0.94[EUR][1000 genomes]
rs62477083	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs664775	0.85[CEU][hapmap]
rs6973564	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs792615	0.82[CEU][hapmap]
rs792621	0.96[EUR][1000 genomes]
rs792624	0.82[CEU][hapmap]
rs792629	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs792634	0.96[EUR][1000 genomes]
rs792635	0.94[EUR][1000 genomes]
rs792636	0.96[EUR][1000 genomes]
rs792638	0.96[EUR][1000 genomes]
rs792639	0.96[EUR][1000 genomes]
rs792641	0.96[EUR][1000 genomes]
rs9690529	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831119	chr7:124714009-124890119	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv2422188	chr7:124782873-125254203	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1029627	chr7:124810399-124901651	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2761087	chr7:124823624-125429662	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124870800-124884000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:124870800-124887000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:124871200-124892800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:124871800-124884800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:124875800-124878600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:124875800-124884200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:124876400-124879200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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