Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11738876	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11745914	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11957758	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12513398	0.85[ASN][1000 genomes]
rs12652566	0.84[ASN][1000 genomes]
rs12654883	0.86[ASN][1000 genomes]
rs13355852	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13359215	0.85[AMR][1000 genomes]
rs1350022	0.86[ASN][1000 genomes]
rs1378444	0.86[ASN][1000 genomes]
rs1455429	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17165846	0.86[ASN][1000 genomes]
rs17165848	0.86[ASN][1000 genomes]
rs17165849	0.86[ASN][1000 genomes]
rs2061115	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35774032	0.85[ASN][1000 genomes]
rs4538635	0.86[ASN][1000 genomes]
rs4559027	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60805392	0.85[ASN][1000 genomes]
rs62366857	0.84[ASN][1000 genomes]
rs6876270	0.86[ASN][1000 genomes]
rs6889185	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6898721	0.86[ASN][1000 genomes]
rs921815	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97646200-97652600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:97646200-97655200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:97646400-97655600	Weak transcription	Brain Substantia Nigra	brain
4	chr5:97648600-97652600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:97651000-97653600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:97651200-97656000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:97651200-97656000	Weak transcription	Brain Anterior Caudate	brain
8	chr5:97652400-97652600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:97652400-97652600	Enhancers	NHDF-Ad	bronchial
10	chr5:97652400-97652600	Enhancers	NHLF	lung

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