Variant report

Variant	rs1459607
Chromosome Location	chr12:84902351-84902352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:84901925..84902765-chr12:85235880..85236805,3	MCF-7	breast:
2	chr12:84902037..84902829-chr12:85012613..85013509,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1459609	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1459620	0.88[ASN][1000 genomes]
rs17178576	0.82[ASN][1000 genomes]
rs61928422	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899363	chr12:84450824-84940345	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv899365	chr12:84511125-84940345	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv899369	chr12:84536107-85067814	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1035863	chr12:84710250-85331290	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1035236	chr12:84790507-85350433	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv430521	chr12:84886467-84926332	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv899373	chr12:84891803-84999922	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:84899400-84903200	Enhancers	Fetal Stomach	stomach
2	chr12:84899800-84902400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:84899800-84903400	Enhancers	Adipose Nuclei	Adipose
4	chr12:84901000-84903000	Enhancers	Fetal Muscle Leg	muscle
5	chr12:84901200-84903200	Enhancers	Colon Smooth Muscle	Colon
6	chr12:84901400-84902600	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr12:84901400-84903800	Enhancers	HMEC	breast
8	chr12:84901600-84902400	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr12:84901600-84902800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr12:84901600-84903400	Flanking Active TSS	NHDF-Ad	bronchial
11	chr12:84901600-84903800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr12:84901800-84902600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr12:84901800-84902800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr12:84901800-84903200	Enhancers	Esophagus	oesophagus
15	chr12:84901800-84903400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr12:84901800-84903800	Enhancers	NHEK	skin
17	chr12:84902000-84902400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr12:84902000-84902400	Enhancers	Osteobl	bone
19	chr12:84902000-84902800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr12:84902000-84902800	Enhancers	Rectal Smooth Muscle	rectum
21	chr12:84902000-84903000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr12:84902000-84903200	Enhancers	NHLF	lung
23	chr12:84902000-84903400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr12:84902000-84903400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr12:84902000-84903400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr12:84902000-84903600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr12:84902000-84903800	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr12:84902200-84902400	Active TSS	Stomach Smooth Muscle	stomach
29	chr12:84902200-84903000	Flanking Active TSS	Hela-S3	cervix
30	chr12:84902200-84903200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr12:84902200-84903200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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