Variant report

Variant	rs145968612
Chromosome Location	chr7:101629994-101629995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:101627966..101630739-chr7:101669621..101671157,2	MCF-7	breast:
2	chr7:101629646..101631231-chr7:101651146..101653804,2	MCF-7	breast:
3	chr7:101611841..101614545-chr7:101629314..101633135,4	MCF-7	breast:
4	chr7:101628172..101630666-chr7:101646616..101649464,3	MCF-7	breast:
5	chr7:101616193..101620421-chr7:101625647..101631766,10	MCF-7	breast:
6	chr7:101627337..101631221-chr7:101631346..101635612,7	MCF-7	breast:
7	chr7:101586542..101589464-chr7:101627667..101631970,4	MCF-7	breast:
8	chr7:101622396..101625620-chr7:101628035..101630999,3	MCF-7	breast:

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv888827	chr7:101562674-101650302	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv482521	chr7:101604002-101718950	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv831080	chr7:101629121-101718950	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101578200-101671200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:101597000-101642000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:101598200-101631600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:101614400-101646400	Weak transcription	Fetal Brain Female	brain
5	chr7:101616400-101633000	Weak transcription	Gastric	stomach
6	chr7:101616600-101630200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:101617000-101634000	Weak transcription	Liver	Liver
8	chr7:101619600-101630800	Weak transcription	HepG2	liver
9	chr7:101620200-101642000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:101622200-101635600	Weak transcription	Pancreas	Pancrea
11	chr7:101623000-101631800	Weak transcription	Fetal Intestine Large	intestine
12	chr7:101623600-101630200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr7:101624600-101630000	Enhancers	Stomach Mucosa	stomach
14	chr7:101625000-101630200	Weak transcription	Spleen	Spleen
15	chr7:101625600-101630200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:101625600-101635400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:101625600-101635400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:101625800-101634200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr7:101626800-101631200	Weak transcription	Primary B cells from cord blood	blood
20	chr7:101626800-101631600	Weak transcription	Hela-S3	cervix
21	chr7:101627000-101630200	Enhancers	Fetal Thymus	thymus
22	chr7:101627000-101632800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:101627000-101633400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:101627000-101633800	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr7:101627000-101647400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:101627000-101671200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:101627200-101630600	Weak transcription	Primary B cells from peripheral blood	blood
28	chr7:101627400-101630200	Enhancers	Thymus	Thymus
29	chr7:101627600-101630600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr7:101627800-101630000	Enhancers	Fetal Muscle Trunk	muscle
31	chr7:101627800-101630200	Enhancers	H9 Cell Line	embryonic stem cell
32	chr7:101627800-101630400	Enhancers	Right Atrium	heart
33	chr7:101627800-101630400	Enhancers	Dnd41	blood
34	chr7:101627800-101630600	Enhancers	Left Ventricle	heart
35	chr7:101627800-101630600	Enhancers	Psoas Muscle	Psoas
36	chr7:101627800-101631000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:101627800-101634400	Strong transcription	Fetal Intestine Small	intestine
38	chr7:101628000-101651600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr7:101628200-101630000	Enhancers	Fetal Lung	lung
40	chr7:101628200-101630400	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr7:101628200-101630600	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr7:101628200-101630600	Enhancers	Fetal Muscle Leg	muscle
43	chr7:101628200-101632200	Enhancers	Placenta Amnion	Placenta Amnion
44	chr7:101628400-101630000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr7:101628400-101630400	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr7:101628400-101630400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr7:101628400-101630400	Enhancers	Fetal Heart	heart
48	chr7:101628400-101630600	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr7:101628400-101630800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr7:101628400-101631000	Enhancers	HUES6 Cell Line	embryonic stem cell

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