Variant report

Variant	rs146120335
Chromosome Location	chr4:101961546-101961547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:101947401..101949556-chr4:101960965..101963315,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3465844	chr4:101958129-101962627	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3417198	chr4:101959379-101962177	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3486460	chr4:101959771-101961606	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv511238	chr4:101960095-101965295	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv594949	chr4:101960259-101961947	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv1837646	chr4:101960259-101965295	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv594952	chr4:101960312-101961947	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101936200-101967800	Weak transcription	Fetal Kidney	kidney
2	chr4:101941200-101971000	Weak transcription	Psoas Muscle	Psoas
3	chr4:101941200-102000200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
5	chr4:101942000-101970200	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:101942400-101971400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:101942600-101966800	Weak transcription	Gastric	stomach
8	chr4:101942600-102003200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:101942600-102024400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:101943000-101961800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:101943200-101967400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:101943200-101967400	Weak transcription	Spleen	Spleen
13	chr4:101943400-101964200	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:101943400-101967200	Weak transcription	Fetal Brain Male	brain
15	chr4:101943800-102023400	Weak transcription	Fetal Lung	lung
16	chr4:101944000-101962000	Weak transcription	A549	lung
17	chr4:101944000-101964600	Weak transcription	NHLF	lung
18	chr4:101944400-101968400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:101944400-101981200	Weak transcription	Pancreas	Pancrea
20	chr4:101944400-102000200	Weak transcription	Fetal Stomach	stomach
21	chr4:101945400-101961600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr4:101945600-101970800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr4:101945800-101970800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr4:101947800-102012600	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:101950200-101967000	Weak transcription	Stomach Mucosa	stomach
26	chr4:101950200-101971400	Weak transcription	Brain Angular Gyrus	brain
27	chr4:101950400-101964000	Weak transcription	HSMMtube	muscle
28	chr4:101950400-101965800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:101950400-101971400	Weak transcription	Brain Anterior Caudate	brain
30	chr4:101951800-101967200	Weak transcription	Right Ventricle	heart
31	chr4:101953600-101966000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:101953600-101970200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr4:101953600-101972000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr4:101953600-101983800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr4:101953600-101992200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:101953600-102015200	Weak transcription	Fetal Intestine Large	intestine
37	chr4:101954000-101965800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr4:101954200-101972000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr4:101955400-101966000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr4:101955400-101966000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr4:101955600-101961800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr4:101955800-101961800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr4:101956600-101963000	Strong transcription	Primary B cells from peripheral blood	blood
44	chr4:101957200-101961600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr4:101957200-101966400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr4:101958000-101961600	Strong transcription	Liver	Liver
47	chr4:101958000-101962200	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr4:101958200-101961600	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr4:101958400-101962000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr4:101958400-101962200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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