Variant report

Variant	rs1464739
Chromosome Location	chr7:97712964-97712965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10280984	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12704968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1880303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1969007	1.00[EUR][1000 genomes]
rs1983439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2088171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2172885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4318996	1.00[EUR][1000 genomes]
rs4509254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4727387	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4729411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6465652	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6465656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6465659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6943900	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6943971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6945999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6956383	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6970100	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6971967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6975661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406084	1.00[AMR][1000 genomes]
rs73709070	1.00[EUR][1000 genomes]
rs7788829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7792787	1.00[EUR][1000 genomes]
rs7800032	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7805804	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs847561	1.00[EUR][1000 genomes]
rs865337	1.00[EUR][1000 genomes]
rs903593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs982466	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3500384	chr7:97527787-98015382	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	esv3500386	chr7:97527787-98015382	Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1017481	chr7:97597641-98041043	Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv539031	chr7:97597641-98041043	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv1019531	chr7:97653880-98034129	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv539032	chr7:97653880-98034129	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	esv1816676	chr7:97676259-97868033	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97709400-97715600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:97709800-97713000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:97709800-97713000	Weak transcription	Fetal Heart	heart
4	chr7:97712000-97713000	Weak transcription	Fetal Intestine Large	intestine
5	chr7:97712800-97713000	Enhancers	Fetal Intestine Small	intestine
6	chr7:97712800-97713000	Enhancers	Right Ventricle	heart
7	chr7:97712800-97713200	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr7:97712800-97714200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:97712800-97714200	Enhancers	Stomach Mucosa	stomach
10	chr7:97712800-97714400	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr7:97712800-97716400	Enhancers	Rectal Mucosa Donor 31	rectum

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