Variant report

Variant	rs1464790
Chromosome Location	chr3:81852923-81852924
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:81807852..81811889-chr3:81850575..81853159,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114480	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11127740	0.96[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs11127742	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11707026	0.93[ASW][hapmap];0.91[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs11711024	0.90[EUR][1000 genomes]
rs11711331	0.87[CHB][hapmap];0.86[GIH][hapmap];0.91[TSI][hapmap]
rs11712243	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11715625	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11915042	0.81[EUR][1000 genomes]
rs12152272	0.90[EUR][1000 genomes]
rs13062741	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[EUR][1000 genomes]
rs13065281	0.91[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs13072957	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.90[MEX][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap]
rs13073613	0.96[CEU][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs13074632	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13075250	0.88[EUR][1000 genomes]
rs13079104	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs13080520	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs13083476	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13088000	0.81[EUR][1000 genomes]
rs13092157	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13099615	0.95[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap]
rs1464791	0.82[EUR][1000 genomes]
rs1524557	0.89[EUR][1000 genomes]
rs17019299	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1851930	0.85[EUR][1000 genomes]
rs2053805	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.83[LWK][hapmap];0.84[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap]
rs2229519	0.93[ASW][hapmap];0.91[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.95[YRI][hapmap]
rs2873054	0.82[EUR][1000 genomes]
rs3755713	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.98[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3772882	0.82[GIH][hapmap]
rs3772883	0.82[GIH][hapmap]
rs3772884	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.90[MEX][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3772891	0.86[CHB][hapmap];0.81[JPT][hapmap];0.84[TSI][hapmap]
rs3772896	0.82[CEU][hapmap]
rs3821548	0.83[CEU][hapmap];0.86[GIH][hapmap];0.91[TSI][hapmap]
rs3821551	0.96[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs3821552	0.91[CEU][hapmap];0.90[YRI][hapmap]
rs3849570	0.82[CHB][hapmap];0.86[GIH][hapmap];0.91[TSI][hapmap]
rs3849571	0.83[CEU][hapmap];0.82[CHB][hapmap]
rs3943556	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs4411908	0.82[GIH][hapmap]
rs6548773	0.81[EUR][1000 genomes]
rs6765917	0.82[EUR][1000 genomes]
rs6792696	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6795133	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.89[MEX][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap]
rs6804587	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7620240	0.83[CEU][hapmap];0.84[GIH][hapmap];0.91[TSI][hapmap]
rs7631052	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7634258	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap]
rs7641973	0.82[EUR][1000 genomes]
rs7642112	0.91[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap]
rs7648245	0.90[EUR][1000 genomes]
rs9817181	0.80[EUR][1000 genomes]
rs9826270	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81852400-81872200	Weak transcription	Left Ventricle	heart

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