Variant report

Variant	rs1464791
Chromosome Location	chr3:81893929-81893930
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11127740	0.80[CEU][hapmap]
rs11707026	0.80[GIH][hapmap]
rs11711024	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11711331	0.96[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs11915042	0.83[EUR][1000 genomes]
rs12152272	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13062741	0.83[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes]
rs13072957	0.80[CEU][hapmap];0.84[GIH][hapmap];0.82[TSI][hapmap]
rs13073613	0.81[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs13075250	0.88[EUR][1000 genomes]
rs13079104	0.84[CEU][hapmap];0.87[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.87[JPT][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs13088000	0.83[EUR][1000 genomes]
rs13091492	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13092157	0.83[EUR][1000 genomes]
rs13099615	0.80[CEU][hapmap]
rs1464790	0.84[CEU][hapmap];0.84[GIH][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs1524557	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1851930	0.84[EUR][1000 genomes]
rs2053805	0.80[CEU][hapmap];0.82[GIH][hapmap];0.82[TSI][hapmap]
rs2594547	0.81[GIH][hapmap]
rs2594551	0.81[GIH][hapmap]
rs2594562	0.81[GIH][hapmap]
rs2680245	0.81[GIH][hapmap]
rs2691093	0.80[CHD][hapmap];0.91[GIH][hapmap];0.82[ASN][1000 genomes]
rs2873054	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3755713	0.86[GIH][hapmap]
rs3772882	0.92[CEU][hapmap];0.93[GIH][hapmap]
rs3772883	0.92[CEU][hapmap];0.93[GIH][hapmap]
rs3772884	0.80[CEU][hapmap];0.82[TSI][hapmap]
rs3772896	0.91[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs3772899	0.82[GIH][hapmap]
rs3772912	0.91[CEU][hapmap];0.82[GIH][hapmap]
rs3821548	0.92[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap]
rs3821551	0.80[CEU][hapmap]
rs3849570	0.96[CEU][hapmap];0.86[CHB][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap]
rs3849571	0.92[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs3860595	0.92[CEU][hapmap];0.89[GIH][hapmap]
rs4411908	0.92[CEU][hapmap];0.93[GIH][hapmap]
rs4622918	0.82[EUR][1000 genomes]
rs6548773	0.83[EUR][1000 genomes]
rs6765917	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6795133	0.84[GIH][hapmap];0.81[TSI][hapmap]
rs6803932	0.81[GIH][hapmap]
rs7620240	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap]
rs7631052	0.81[EUR][1000 genomes]
rs7634258	0.80[CEU][hapmap];0.84[GIH][hapmap];0.82[TSI][hapmap]
rs7641973	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7648245	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9817181	0.83[EUR][1000 genomes]
rs9820349	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9826270	0.83[EUR][1000 genomes]
rs9841087	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9842330	0.80[EUR][1000 genomes]
rs9854004	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81889200-81894800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:81889400-81895800	Weak transcription	Psoas Muscle	Psoas
3	chr3:81891600-81895800	Weak transcription	Dnd41	blood

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