Variant report

Variant	rs1465168
Chromosome Location	chr6:101880226-101880227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12211524	0.89[CHB][hapmap];0.92[YRI][hapmap];0.83[ASN][1000 genomes]
rs1465169	0.92[CEU][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1856310	0.88[YRI][hapmap]
rs2255005	0.92[YRI][hapmap]
rs2518157	0.92[CEU][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2518227	0.95[MEX][hapmap]
rs2518246	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2579924	0.92[CEU][hapmap];0.95[MEX][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2787554	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[ASN][1000 genomes]
rs2787564	0.89[CHB][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2787565	0.88[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.85[MEX][hapmap];0.86[MKK][hapmap];0.83[TSI][hapmap];0.92[YRI][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2788274	0.89[CHB][hapmap];0.86[GIH][hapmap];0.85[MEX][hapmap];0.88[YRI][hapmap]
rs2852525	0.83[ASN][1000 genomes]
rs2852527	1.00[CHB][hapmap];0.84[YRI][hapmap]
rs2852529	0.88[YRI][hapmap]
rs997279	0.89[CHB][hapmap];0.88[YRI][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101851000-101882000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:101864400-101882800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:101870600-101882600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:101877200-101883200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:101877400-101882400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:101878000-101882800	Weak transcription	Brain Anterior Caudate	brain
7	chr6:101879000-101882000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:101879200-101882600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:101879200-101892600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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