Variant report

Variant	rs1465766
Chromosome Location	chr1:224888421-224888422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:224862745..224864541-chr1:224886304..224888766,2	K562	blood:
2	chr1:224888278..224889586-chr1:225038704..225039646,5	MCF-7	breast:
3	chr1:224888381..224889340-chr1:225040418..225041300,3	MCF-7	breast:
4	chr1:224883559..224885900-chr1:224887129..224888856,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1036431	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1039265	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10495227	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10915691	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10915693	0.87[CHB][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10915695	0.88[CHB][hapmap];0.81[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11805320	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12058085	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060334	0.92[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12062831	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12065840	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12068125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12072810	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12073052	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12088524	0.87[CHB][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12092532	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12562581	0.85[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12567125	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1337538	0.82[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1465767	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16850786	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4363402	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61603030	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61827113	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61827152	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6426147	0.87[CHB][hapmap];0.80[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7541279	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7554310	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224862400-224902000	Weak transcription	Pancreas	Pancrea
2	chr1:224877600-224891600	Weak transcription	Dnd41	blood
3	chr1:224881400-224895400	Weak transcription	Ovary	ovary
4	chr1:224885000-224920200	Weak transcription	Right Atrium	heart
5	chr1:224885200-224891200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:224885600-224895200	Weak transcription	NH-A	brain
7	chr1:224885800-224891200	Weak transcription	NHLF	lung
8	chr1:224885800-224891400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:224885800-224895200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:224886000-224890200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr1:224886200-224891600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:224886200-224891600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:224887400-224889000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:224888400-224888600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:224888400-224888600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
16	chr1:224888400-224888800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr1:224888400-224889000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:224888400-224889200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr1:224888400-224889200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr1:224888400-224889200	Enhancers	NHDF-Ad	bronchial
21	chr1:224888400-224894200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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