Variant report

Variant	rs1466183
Chromosome Location	chr16:80617693-80617694
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80613297..80615975-chr16:80617630..80621404,3	K562	blood:
2	chr16:80616339..80621061-chr16:80643147..80647399,5	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12051322	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1452501	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1452502	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1466182	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2316155	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9923300	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9923392	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80612200-80618600	Weak transcription	Small Intestine	intestine
2	chr16:80615600-80619800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr16:80615800-80619600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr16:80615800-80624800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr16:80616200-80619800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr16:80616600-80619800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr16:80617000-80618000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr16:80617000-80618000	Enhancers	NHDF-Ad	bronchial
9	chr16:80617000-80618200	Enhancers	HSMM	muscle
10	chr16:80617200-80617800	Enhancers	Fetal Muscle Leg	muscle
11	chr16:80617200-80617800	Enhancers	HSMMtube	muscle
12	chr16:80617200-80618000	Enhancers	NH-A	brain
13	chr16:80617200-80618200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr16:80617200-80618200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr16:80617200-80618400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr16:80617200-80620800	Enhancers	GM12878-XiMat	blood
17	chr16:80617400-80618000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr16:80617400-80618000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr16:80617400-80618000	Enhancers	NHEK	skin
20	chr16:80617400-80618000	Enhancers	Osteobl	bone
21	chr16:80617600-80617800	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr16:80617600-80618000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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