Variant report

Variant	rs1466555
Chromosome Location	chr8:9995287-9995288
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10107485	0.87[ASN][1000 genomes]
rs1160369	0.89[ASN][1000 genomes]
rs11774411	0.90[ASN][1000 genomes]
rs11783851	0.81[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs11785434	0.84[ASN][1000 genomes]
rs11785454	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12542030	0.82[ASN][1000 genomes]
rs12545469	0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs12545775	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12545788	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12547884	0.93[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12549943	1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs12674871	0.82[ASN][1000 genomes]
rs12680389	1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs13249013	0.92[ASN][1000 genomes]
rs13256357	0.85[ASN][1000 genomes]
rs1484645	0.82[CHB][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1564808	0.84[ASN][1000 genomes]
rs17151142	0.90[ASN][1000 genomes]
rs17151188	0.81[ASN][1000 genomes]
rs17151190	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17151201	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17155393	0.84[ASN][1000 genomes]
rs1984863	0.94[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2016221	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2898242	0.88[ASN][1000 genomes]
rs4841283	0.82[CEU][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66602888	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6985791	0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7008407	0.80[JPT][hapmap];0.90[ASN][1000 genomes]
rs7008695	0.84[ASN][1000 genomes]
rs7012601	0.90[ASN][1000 genomes]
rs7016690	0.90[ASN][1000 genomes]
rs72626643	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7830843	0.92[ASN][1000 genomes]
rs9329215	0.89[ASN][1000 genomes]
rs9644681	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1034343	chr8:9948342-10014155	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1850829	chr8:9958321-10045451	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9970600-9995800	Weak transcription	Pancreas	Pancrea
2	chr8:9986200-10002200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:9987200-9995800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:9988800-9996200	Weak transcription	Brain Hippocampus Middle	brain
5	chr8:9988800-10002200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:9989000-10000400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr8:9991200-9997600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr8:9991200-10004600	Weak transcription	Esophagus	oesophagus
9	chr8:9991600-9996000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:9991800-9995800	Enhancers	Fetal Brain Female	brain
11	chr8:9992000-9997400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:9992200-9995400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr8:9992200-9995800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr8:9992200-9995800	Weak transcription	Left Ventricle	heart
15	chr8:9992200-9995800	Weak transcription	Lung	lung
16	chr8:9992200-9995800	Weak transcription	Right Atrium	heart
17	chr8:9992200-10004800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:9992200-10004800	Weak transcription	Right Ventricle	heart
19	chr8:9992400-10000600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr8:9992600-9995400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr8:9992600-9995800	Weak transcription	Brain Anterior Caudate	brain
22	chr8:9992600-9995800	Weak transcription	Fetal Heart	heart
23	chr8:9992600-9996200	Weak transcription	Brain Substantia Nigra	brain
24	chr8:9992600-10000600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr8:9992800-9995800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:9993000-9995600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:9993400-9995400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr8:9994200-9995400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr8:9994800-9995800	Enhancers	Liver	Liver
30	chr8:9995000-9996400	Enhancers	Small Intestine	intestine
31	chr8:9995000-9996600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr8:9995000-9996800	Enhancers	Fetal Intestine Large	intestine
33	chr8:9995000-9998600	Enhancers	Adipose Nuclei	Adipose
34	chr8:9995000-10000600	Enhancers	Fetal Brain Male	brain
35	chr8:9995200-9995400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr8:9995200-9995800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr8:9995200-9996600	Enhancers	Brain Angular Gyrus	brain
38	chr8:9995200-9996800	Enhancers	Brain Germinal Matrix	brain
39	chr8:9995200-9997800	Enhancers	Fetal Intestine Small	intestine

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