Variant report

Variant	rs146752242
Chromosome Location	chr5:98134586-98134587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:98129808..98132282-chr5:98134081..98135788,2	K562	blood:
2	chr5:98105450..98112138-chr5:98128603..98138411,14	MCF-7	breast:
3	chr5:98117951..98120530-chr5:98132324..98136136,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHD1-4	chr5:98133223-98134788	refGeneNc_4273_NR_033932

Variant related genes	Relation type
ENSG00000246763	Chromatin interaction
ENSG00000174136	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv882415	chr5:98134186-98312447	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98112000-98135800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr5:98123800-98136800	Weak transcription	Fetal Brain Male	brain
3	chr5:98123800-98140600	Weak transcription	Brain Substantia Nigra	brain
4	chr5:98129400-98141200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:98129600-98136000	Weak transcription	Esophagus	oesophagus
6	chr5:98130000-98136600	Weak transcription	Aorta	Aorta
7	chr5:98130000-98137600	Weak transcription	Adipose Nuclei	Adipose
8	chr5:98130200-98136200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:98130200-98139200	Weak transcription	GM12878-XiMat	blood
10	chr5:98130600-98136600	Weak transcription	Fetal Intestine Large	intestine
11	chr5:98130600-98140200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:98130800-98136400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:98130800-98138800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:98130800-98138800	Weak transcription	Fetal Stomach	stomach
15	chr5:98130800-98140200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:98131200-98141400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:98131400-98139800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:98131800-98137400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:98132000-98136000	Weak transcription	NHDF-Ad	bronchial
20	chr5:98132000-98139800	Weak transcription	NHEK	skin
21	chr5:98132200-98135800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr5:98132200-98140200	Weak transcription	Fetal Intestine Small	intestine
23	chr5:98132200-98140400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr5:98132400-98135200	Weak transcription	HUVEC	blood vessel
25	chr5:98132600-98135400	Weak transcription	NH-A	brain
26	chr5:98132600-98135600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr5:98132600-98136000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:98132600-98136200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr5:98132600-98137600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr5:98132600-98139800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr5:98132600-98142200	Weak transcription	NHLF	lung
32	chr5:98132600-98154000	Weak transcription	HSMM	muscle
33	chr5:98133200-98139600	Weak transcription	Fetal Muscle Leg	muscle
34	chr5:98134200-98134800	Strong transcription	Fetal Muscle Trunk	muscle
35	chr5:98134400-98134600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr5:98134400-98135000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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