Variant report

Variant	rs1468861
Chromosome Location	chr7:104290370-104290371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10250078	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10953437	1.00[YRI][hapmap]
rs1468862	1.00[YRI][hapmap]
rs1861610	1.00[AMR][1000 genomes]
rs2193199	1.00[AMR][1000 genomes]
rs2470962	1.00[AMR][1000 genomes]
rs4431535	1.00[AMR][1000 genomes]
rs4623345	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4727610	1.00[YRI][hapmap]
rs4730033	1.00[AMR][1000 genomes]
rs4730046	1.00[AMR][1000 genomes]
rs6466013	1.00[YRI][hapmap]
rs6944590	1.00[AMR][1000 genomes]
rs6955297	1.00[YRI][hapmap]
rs6958342	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6979378	1.00[YRI][hapmap]
rs7784639	1.00[AMR][1000 genomes]
rs7801079	1.00[AMR][1000 genomes]
rs7801340	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024532	chr7:104281393-104299847	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104285000-104290400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:104287800-104290400	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:104290000-104292800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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