Variant report

Variant	rs1468864
Chromosome Location	chr7:104291453-104291454
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10255159	0.81[YRI][hapmap]
rs10270888	0.90[YRI][hapmap]
rs10271797	0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10272959	0.90[YRI][hapmap]
rs1465342	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1548938	0.80[YRI][hapmap]
rs2008042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2080483	0.90[YRI][hapmap]
rs2193198	0.88[YRI][hapmap]
rs2193199	0.87[ASW][hapmap];0.90[MKK][hapmap];0.90[YRI][hapmap]
rs2193200	1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs2385238	0.80[YRI][hapmap]
rs2385251	0.83[LWK][hapmap];0.90[YRI][hapmap]
rs2385254	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4730033	0.89[AFR][1000 genomes]
rs6944590	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs7784639	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs7801079	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7801340	0.88[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024532	chr7:104281393-104299847	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104290000-104292800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:104290400-104295000	Enhancers	Colon Smooth Muscle	Colon
3	chr7:104290400-104295600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:104290800-104293200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:104291000-104295600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr7:104291200-104292400	Enhancers	Brain Anterior Caudate	brain
7	chr7:104291200-104292400	Enhancers	Brain Substantia Nigra	brain
8	chr7:104291400-104291800	Active TSS	Brain Cingulate Gyrus	brain
9	chr7:104291400-104292000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:104291400-104292000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:104291400-104292000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
12	chr7:104291400-104292000	Enhancers	Brain Germinal Matrix	brain
13	chr7:104291400-104292000	Flanking Active TSS	Brain Hippocampus Middle	brain
14	chr7:104291400-104292400	Enhancers	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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