Variant report

Variant	rs1470258
Chromosome Location	chr11:10275218-10275219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11042615	1.00[YRI][hapmap]
rs11042683	1.00[YRI][hapmap]
rs12417184	1.00[YRI][hapmap]
rs13306112	1.00[YRI][hapmap]
rs17295786	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1822292	1.00[YRI][hapmap]
rs2044142	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2044146	0.88[YRI][hapmap]
rs2083712	0.88[YRI][hapmap]
rs2083713	0.88[YRI][hapmap]
rs2403269	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2920148	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2920149	0.89[ASN][1000 genomes]
rs2920153	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2920154	0.88[YRI][hapmap]
rs2957652	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2957657	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs34596876	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4643073	0.80[AFR][1000 genomes]
rs4910093	0.88[YRI][hapmap]
rs59060963	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6484142	0.89[ASN][1000 genomes]
rs7935934	1.00[YRI][hapmap]
rs7938491	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10254000-10276200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:10254400-10277400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr11:10255600-10277200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:10255600-10279000	Weak transcription	Small Intestine	intestine
5	chr11:10255800-10277400	Weak transcription	HSMM	muscle
6	chr11:10259200-10280200	Weak transcription	A549	lung
7	chr11:10263600-10280400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:10263800-10280200	Weak transcription	Ovary	ovary
9	chr11:10264600-10277400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:10264600-10280400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:10264600-10280800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:10264800-10282800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:10268600-10276600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr11:10268600-10300000	Weak transcription	Fetal Intestine Small	intestine
15	chr11:10268800-10276600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:10269000-10277200	Weak transcription	NHLF	lung
17	chr11:10269200-10276600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:10269800-10283000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:10271200-10277800	Weak transcription	Osteobl	bone
20	chr11:10272000-10276600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr11:10272000-10278000	Weak transcription	NHDF-Ad	bronchial
22	chr11:10273400-10278800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:10273600-10277800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr11:10273600-10278800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:10273600-10278800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:10273600-10280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:10273800-10280800	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links