Variant report

Variant	rs1471289
Chromosome Location	chr5:92685426-92685427
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10064251	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10072317	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10463227	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11135387	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12152903	0.92[ASN][1000 genomes]
rs187931	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2343708	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs269696	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs269700	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs269702	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs269703	0.80[ASN][1000 genomes]
rs4869111	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4869195	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6420123	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs898597	0.80[ASN][1000 genomes]
rs9314085	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92683600-92685600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr5:92683800-92686400	Enhancers	HMEC	breast
3	chr5:92684000-92686400	Enhancers	HSMM	muscle
4	chr5:92684200-92686000	Enhancers	NH-A	brain
5	chr5:92684400-92685800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:92684400-92686000	Enhancers	Osteobl	bone
7	chr5:92684400-92686200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:92684400-92686200	Enhancers	Hela-S3	cervix
9	chr5:92684800-92685600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:92685200-92685800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:92685200-92685800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:92685200-92685800	Enhancers	HSMMtube	muscle
13	chr5:92685200-92686000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:92685200-92686000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:92685200-92686000	Enhancers	NHEK	skin
16	chr5:92685200-92686400	Enhancers	HUVEC	blood vessel
17	chr5:92685400-92685800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:92685400-92685800	Enhancers	NHDF-Ad	bronchial
19	chr5:92685400-92686400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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