Variant report

Variant	rs1471517
Chromosome Location	chr8:63588151-63588152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10104349	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11775947	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13250037	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13260720	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13268291	0.82[EUR][1000 genomes]
rs2127579	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4357278	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4501571	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4738993	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7000475	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7819367	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890960	chr8:63516962-63629549	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63572400-63602600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63587400-63602600	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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