Variant report

Variant	rs147193133
Chromosome Location	chr11:76090965-76090966
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT1	chr11:76090957-76091093	GM12878	blood:	n/a	n/a
2	MAZ	chr11:76090859-76093234	IMR90	lung:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
3	HCFC1	chr11:76090021-76093194	Hela-S3	cervix:	n/a	n/a
4	CUX1	chr11:76090806-76091313	K562	blood:	n/a	n/a
5	RFX5	chr11:76090956-76091516	Hela-S3	cervix:	n/a	n/a
6	MTA3	chr11:76090947-76091683	GM12878	blood:	n/a	n/a
7	MXI1	chr11:76090717-76093238	SK-N-SH	brain:	n/a	n/a
8	MTA3	chr11:76090885-76091524	GM12878	blood:	n/a	n/a
9	NR2F2	chr11:76090765-76091521	K562	blood:	n/a	n/a
10	CBX3	chr11:76090952-76091674	K562	blood:	n/a	n/a
11	MYC	chr11:76090847-76091587	MCF10A-Er-Src	breast:	n/a	n/a
12	MXI1	chr11:76090920-76093212	IMR90	lung:	n/a	n/a
13	ZKSCAN1	chr11:76090476-76091747	Hela-S3	cervix:	n/a	n/a
14	CTCF	chr11:76090914-76093713	SK-N-SH	brain:	n/a	chr11:76091717-76091730 chr11:76091717-76091726

No.	Distal block	Cell Line	Cell type
1	chr11:76079303..76082514-chr11:76090617..76092781,5	K562	blood:
2	chr11:76089990..76094695-chr11:76100568..76104844,7	MCF-7	breast:
3	chr11:76089758..76095735-chr11:76153234..76157826,15	MCF-7	breast:
4	chr11:76090234..76093573-chr11:76154824..76158196,8	MCF-7	breast:
5	chr11:76090615..76095251-chr11:76152894..76157527,10	K562	blood:

Variant related genes	Relation type
ENSG00000179240	TF binding region
ENSG00000271757	Chromatin interaction
ENSG00000255135	Chromatin interaction
ENSG00000272301	Chromatin interaction
ENSG00000137492	Chromatin interaction
ENSG00000158636	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440498	chr11:76090729-76093277	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76067600-76091000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:76082400-76091000	Weak transcription	Aorta	Aorta
3	chr11:76085800-76091000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:76087200-76091000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:76087600-76091000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr11:76089200-76091000	Enhancers	Primary T cells fromperipheralblood	blood
7	chr11:76089200-76091000	Enhancers	Ovary	ovary
8	chr11:76089600-76091000	Enhancers	Fetal Thymus	thymus
9	chr11:76089600-76091200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:76089600-76091200	Flanking Active TSS	Dnd41	blood
11	chr11:76089800-76091000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:76089800-76091000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:76089800-76091000	Enhancers	Left Ventricle	heart
14	chr11:76090000-76091000	Enhancers	Primary B cells from peripheral blood	blood
15	chr11:76090000-76091000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr11:76090000-76091000	Enhancers	Small Intestine	intestine
17	chr11:76090200-76091000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr11:76090200-76091000	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr11:76090200-76091000	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr11:76090200-76091200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr11:76090200-76091200	Flanking Active TSS	Fetal Brain Female	brain
22	chr11:76090200-76091200	Flanking Active TSS	Hela-S3	cervix
23	chr11:76090200-76091400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
24	chr11:76090200-76091600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:76090200-76091600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:76090200-76093400	Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr11:76090400-76091000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:76090400-76091000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:76090400-76091000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:76090400-76091000	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr11:76090400-76091000	Enhancers	Colon Smooth Muscle	Colon
32	chr11:76090400-76091000	Enhancers	Fetal Heart	heart
33	chr11:76090400-76091000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr11:76090400-76091000	Enhancers	Stomach Mucosa	stomach
35	chr11:76090400-76091200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:76090400-76091200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr11:76090400-76091200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:76090400-76091200	Flanking Active TSS	Fetal Kidney	kidney
39	chr11:76090400-76091200	Enhancers	Spleen	Spleen
40	chr11:76090400-76091200	Flanking Active TSS	NHEK	skin
41	chr11:76090400-76091400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:76090400-76091400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:76090400-76091400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:76090400-76091400	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr11:76090400-76091400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
46	chr11:76090400-76091400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
47	chr11:76090400-76091400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:76090400-76091400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:76090400-76091400	Flanking Active TSS	Liver	Liver
50	chr11:76090400-76091400	Flanking Active TSS	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links