Variant report

Variant	rs147201156
Chromosome Location	chr3:145941289-145941290
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr3:145941108-145941581	A549	lung:	n/a	chr3:145941382-145941393 chr3:145941406-145941418 chr3:145941382-145941392 chr3:145941407-145941417 chr3:145941384-145941391 chr3:145941382-145941391 chr3:145941381-145941393 chr3:145941383-145941392 chr3:145941407-145941417 chr3:145941382-145941392
2	FOXA2	chr3:145941203-145941573	A549	lung:	n/a	n/a
3	FOSL2	chr3:145941207-145941577	HepG2	liver:	n/a	chr3:145941382-145941393 chr3:145941406-145941418 chr3:145941382-145941392 chr3:145941407-145941417 chr3:145941384-145941391 chr3:145941382-145941391 chr3:145941381-145941393 chr3:145941383-145941392 chr3:145941407-145941417 chr3:145941382-145941392
4	NR3C1	chr3:145941283-145941553	A549	lung:	n/a	n/a
5	JUND	chr3:145940043-145941577	HepG2	liver:	n/a	chr3:145941406-145941418 chr3:145941381-145941392 chr3:145941382-145941392 chr3:145941407-145941417 chr3:145941384-145941391 chr3:145941382-145941391 chr3:145941381-145941393 chr3:145941383-145941392 chr3:145941407-145941417 chr3:145941382-145941392
6	CTCF	chr3:145939765-145941332	A549	lung:	n/a	n/a
7	FOS	chr3:145941243-145941442	MCF10A-Er-Src	breast:	n/a	chr3:145941406-145941418 chr3:145941382-145941392 chr3:145941407-145941417 chr3:145941384-145941391 chr3:145941382-145941391 chr3:145941381-145941393 chr3:145941381-145941392 chr3:145941383-145941392 chr3:145941407-145941417 chr3:145941382-145941392
8	EP300	chr3:145941213-145941542	HepG2	liver:	n/a	chr3:145941382-145941391
9	SP1	chr3:145941101-145941588	A549	lung:	n/a	n/a
10	FOS	chr3:145940041-145942138	HUVEC	blood vessel:	n/a	chr3:145941406-145941418 chr3:145941382-145941392 chr3:145941407-145941417 chr3:145941384-145941391 chr3:145941382-145941391 chr3:145941381-145941393 chr3:145941381-145941392 chr3:145941383-145941392 chr3:145941407-145941417 chr3:145941382-145941392
11	JUND	chr3:145941250-145941570	HepG2	liver:	n/a	chr3:145941406-145941418 chr3:145941381-145941392 chr3:145941382-145941392 chr3:145941407-145941417 chr3:145941384-145941391 chr3:145941382-145941391 chr3:145941381-145941393 chr3:145941383-145941392 chr3:145941407-145941417 chr3:145941382-145941392
12	FOS	chr3:145941263-145941505	MCF10A-Er-Src	breast:	n/a	chr3:145941406-145941418 chr3:145941382-145941392 chr3:145941407-145941417 chr3:145941384-145941391 chr3:145941382-145941391 chr3:145941381-145941393 chr3:145941381-145941392 chr3:145941383-145941392 chr3:145941407-145941417 chr3:145941382-145941392
13	MAFF	chr3:145941213-145941574	HepG2	liver:	n/a	n/a
14	JUN	chr3:145941199-145941531	HepG2	liver:	n/a	chr3:145941406-145941418 chr3:145941382-145941392 chr3:145941407-145941417 chr3:145941384-145941391 chr3:145941382-145941391 chr3:145941381-145941393 chr3:145941383-145941392 chr3:145941407-145941417 chr3:145941382-145941392
15	NFIC	chr3:145941152-145941607	HepG2	liver:	n/a	n/a
16	TCF12	chr3:145941078-145941590	A549	lung:	n/a	n/a
17	FOSL2	chr3:145941174-145941548	HepG2	liver:	n/a	chr3:145941382-145941393 chr3:145941406-145941418 chr3:145941382-145941392 chr3:145941407-145941417 chr3:145941384-145941391 chr3:145941382-145941391 chr3:145941381-145941393 chr3:145941383-145941392 chr3:145941407-145941417 chr3:145941382-145941392
18	MAFK	chr3:145941228-145941570	HepG2	liver:	n/a	chr3:145941382-145941397 chr3:145941384-145941393
19	ARID3A	chr3:145941119-145941527	HepG2	liver:	n/a	n/a
20	JUN	chr3:145941201-145941560	HUVEC	blood vessel:	n/a	chr3:145941406-145941418 chr3:145941382-145941392 chr3:145941407-145941417 chr3:145941384-145941391 chr3:145941382-145941391 chr3:145941381-145941393 chr3:145941383-145941392 chr3:145941407-145941417 chr3:145941382-145941392
21	EP300	chr3:145941106-145941572	A549	lung:	n/a	chr3:145941382-145941391
22	FOSL2	chr3:145939969-145941586	A549	lung:	n/a	chr3:145941382-145941393 chr3:145941406-145941418 chr3:145941382-145941392 chr3:145941407-145941417 chr3:145941384-145941391 chr3:145941382-145941391 chr3:145941381-145941393 chr3:145941383-145941392 chr3:145941407-145941417 chr3:145941382-145941392
23	MAFK	chr3:145941235-145941578	HepG2	liver:	n/a	chr3:145941382-145941397 chr3:145941384-145941393
24	JUND	chr3:145941205-145941617	A549	lung:	n/a	chr3:145941406-145941418 chr3:145941381-145941392 chr3:145941382-145941392 chr3:145941407-145941417 chr3:145941384-145941391 chr3:145941382-145941391 chr3:145941381-145941393 chr3:145941383-145941392 chr3:145941407-145941417 chr3:145941382-145941392
25	JUND	chr3:145941285-145941615	A549	lung:	n/a	chr3:145941406-145941418 chr3:145941381-145941392 chr3:145941382-145941392 chr3:145941407-145941417 chr3:145941384-145941391 chr3:145941382-145941391 chr3:145941381-145941393 chr3:145941383-145941392 chr3:145941407-145941417 chr3:145941382-145941392
26	FOS	chr3:145941211-145941504	MCF10A-Er-Src	breast:	n/a	chr3:145941406-145941418 chr3:145941382-145941392 chr3:145941407-145941417 chr3:145941384-145941391 chr3:145941382-145941391 chr3:145941381-145941393 chr3:145941381-145941392 chr3:145941383-145941392 chr3:145941407-145941417 chr3:145941382-145941392
27	SP1	chr3:145941101-145941559	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:145940299..145941372-chr3:146044662..146045624,8	MCF-7	breast:

Variant related genes	Relation type
PLSCR4	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012485	chr3:145861750-145947125	Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536758	chr3:145861750-145947125	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv877615	chr3:145910430-145988231	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv877616	chr3:145921954-145983688	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145924400-145944000	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:145924400-145945200	Weak transcription	HSMMtube	muscle
3	chr3:145925000-145945600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:145925400-145952800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:145925600-145950800	Weak transcription	Fetal Kidney	kidney
6	chr3:145932600-145943800	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:145934600-145952200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:145936000-145945200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:145938600-145941400	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr3:145939800-145941400	Flanking Active TSS	Liver	Liver
11	chr3:145939800-145941400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr3:145939800-145941400	Flanking Active TSS	A549	lung
13	chr3:145940000-145941400	Enhancers	NHLF	lung
14	chr3:145940200-145941400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr3:145940200-145941400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr3:145940200-145941400	Enhancers	Stomach Mucosa	stomach
17	chr3:145940200-145941400	Enhancers	NH-A	brain
18	chr3:145940400-145941600	Enhancers	Pancreas	Pancrea
19	chr3:145940400-145942000	Enhancers	Fetal Intestine Large	intestine
20	chr3:145940600-145941400	Enhancers	Brain Anterior Caudate	brain
21	chr3:145940600-145941400	Enhancers	Osteobl	bone
22	chr3:145940600-145941600	Enhancers	Gastric	stomach
23	chr3:145940600-145943600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:145940600-145944800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:145940600-145953000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:145940600-145953600	Weak transcription	NHDF-Ad	bronchial
27	chr3:145940800-145941400	Enhancers	Adipose Nuclei	Adipose
28	chr3:145940800-145941400	Enhancers	Duodenum Mucosa	Duodenum
29	chr3:145940800-145941600	Enhancers	Fetal Intestine Small	intestine
30	chr3:145940800-145941600	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr3:145940800-145941800	Weak transcription	Fetal Lung	lung
32	chr3:145940800-145943200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:145940800-145944000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr3:145940800-145944000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr3:145940800-145944400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:145940800-145944400	Weak transcription	Fetal Stomach	stomach
37	chr3:145940800-145945000	Weak transcription	Aorta	Aorta
38	chr3:145940800-145945000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr3:145940800-145945200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr3:145940800-145945200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr3:145941000-145941400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:145941000-145941400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:145941000-145941400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr3:145941000-145941400	Weak transcription	Left Ventricle	heart
45	chr3:145941000-145941400	Weak transcription	Lung	lung
46	chr3:145941000-145941400	Weak transcription	Ovary	ovary
47	chr3:145941000-145942200	Enhancers	HUVEC	blood vessel
48	chr3:145941200-145941600	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr3:145941200-145941600	Enhancers	Right Atrium	heart
50	chr3:145941200-145941600	Flanking Active TSS	HepG2	liver

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