Variant report

Variant	rs147393918
Chromosome Location	chr1:93197603-93197604
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPL5-4	chr1:93197557-93198172	NONHSAT004464

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv997898	chr1:93167128-93228156	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	esv3340706	chr1:93187980-93207933	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv871263	chr1:93196273-93248228	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93098400-93205400	Weak transcription	NHLF	lung
2	chr1:93123600-93213400	Weak transcription	Gastric	stomach
3	chr1:93155800-93213400	Weak transcription	Lung	lung
4	chr1:93161000-93197800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:93161000-93199000	Weak transcription	Left Ventricle	heart
6	chr1:93174400-93202000	Weak transcription	Fetal Heart	heart
7	chr1:93175800-93199400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:93182600-93200000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr1:93186600-93205600	Weak transcription	Ovary	ovary
10	chr1:93186800-93197800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:93186800-93213400	Weak transcription	K562	blood
12	chr1:93188400-93202000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:93188400-93205400	Weak transcription	Small Intestine	intestine
14	chr1:93188600-93199200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr1:93188600-93203800	Weak transcription	HMEC	breast
16	chr1:93188800-93201000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr1:93189000-93197800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr1:93189000-93203800	Weak transcription	Hela-S3	cervix
19	chr1:93189000-93213400	Weak transcription	Fetal Lung	lung
20	chr1:93189400-93204200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr1:93189400-93206000	Weak transcription	Brain Anterior Caudate	brain
22	chr1:93189800-93199200	Weak transcription	NH-A	brain
23	chr1:93190000-93221800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr1:93190200-93198000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr1:93190200-93220000	Weak transcription	Fetal Muscle Leg	muscle
26	chr1:93190400-93198400	Weak transcription	Fetal Stomach	stomach
27	chr1:93190400-93199200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:93190800-93197800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr1:93191200-93221600	Weak transcription	Fetal Intestine Large	intestine
30	chr1:93191600-93199400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr1:93192400-93221200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr1:93192400-93226400	Weak transcription	Esophagus	oesophagus
33	chr1:93193000-93200600	Weak transcription	Brain Hippocampus Middle	brain
34	chr1:93193000-93203800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr1:93193000-93223800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr1:93193600-93200600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr1:93193600-93213200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr1:93194200-93199200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr1:93194600-93199400	Weak transcription	Adipose Nuclei	Adipose
40	chr1:93194600-93200600	Weak transcription	HSMM	muscle
41	chr1:93194600-93207400	Weak transcription	Osteobl	bone
42	chr1:93194600-93218000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr1:93195000-93201200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr1:93195000-93218000	Weak transcription	NHEK	skin
45	chr1:93196000-93199000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr1:93196000-93202000	Weak transcription	Aorta	Aorta
47	chr1:93196200-93198200	Weak transcription	Fetal Intestine Small	intestine
48	chr1:93196200-93202400	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr1:93196200-93203000	Weak transcription	HSMMtube	muscle
50	chr1:93196200-93213400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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