Variant report

Variant	rs147477452
Chromosome Location	chr1:76739004-76739005
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1499	chr1:76704981-76749688	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1988708	chr1:76739004-76739005	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76726400-76740000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr1:76727400-76744800	Weak transcription	Aorta	Aorta
3	chr1:76735000-76740200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:76735000-76743400	Weak transcription	Fetal Kidney	kidney
5	chr1:76735200-76744600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:76735200-76745000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:76735400-76744200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:76735600-76739600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr1:76735600-76740000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:76735600-76750600	Weak transcription	Left Ventricle	heart
11	chr1:76736400-76744400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr1:76736600-76745000	Weak transcription	Right Atrium	heart
13	chr1:76737000-76739200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr1:76737600-76740200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:76738000-76739400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr1:76739000-76739200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr1:76739000-76739600	Enhancers	Primary T cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links