Variant report

Variant	rs1476335
Chromosome Location	chr3:145215363-145215364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10935575	1.00[CHB][hapmap]
rs11916198	0.85[EUR][1000 genomes]
rs11921424	0.85[EUR][1000 genomes]
rs11924340	1.00[CHB][hapmap];0.93[GIH][hapmap]
rs11927995	0.85[EUR][1000 genomes]
rs12186092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12636147	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1476334	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1476336	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481067	0.85[EUR][1000 genomes]
rs1481068	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1481080	0.89[EUR][1000 genomes]
rs1481082	0.87[EUR][1000 genomes]
rs1481084	0.87[EUR][1000 genomes]
rs1600695	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1608311	1.00[CHB][hapmap];0.96[GIH][hapmap]
rs1609197	0.84[EUR][1000 genomes]
rs17236061	0.85[EUR][1000 genomes]
rs17825801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17825819	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17825831	0.85[EUR][1000 genomes]
rs17825849	0.84[EUR][1000 genomes]
rs17825861	0.85[EUR][1000 genomes]
rs1842544	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1842549	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1904912	0.89[EUR][1000 genomes]
rs3915273	0.84[EUR][1000 genomes]
rs4095734	0.82[EUR][1000 genomes]
rs4337601	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs4356775	0.89[EUR][1000 genomes]
rs4368449	0.85[EUR][1000 genomes]
rs55643920	0.85[EUR][1000 genomes]
rs55648237	0.89[EUR][1000 genomes]
rs55825652	0.85[EUR][1000 genomes]
rs56019137	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56250637	0.85[EUR][1000 genomes]
rs56339934	0.89[EUR][1000 genomes]
rs56741139	0.85[EUR][1000 genomes]
rs56894133	0.87[EUR][1000 genomes]
rs57330702	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58536958	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58604156	0.88[EUR][1000 genomes]
rs58967534	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59758469	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62271768	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62271771	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62271778	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62271779	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62271780	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62271781	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62271797	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62271798	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62271799	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62271801	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62271824	0.87[EUR][1000 genomes]
rs62271825	0.86[EUR][1000 genomes]
rs62271829	0.85[EUR][1000 genomes]
rs62271830	0.84[EUR][1000 genomes]
rs62271831	0.84[EUR][1000 genomes]
rs62271832	0.85[EUR][1000 genomes]
rs62271845	0.84[EUR][1000 genomes]
rs62271846	0.82[EUR][1000 genomes]
rs62271848	0.81[EUR][1000 genomes]
rs62271850	0.82[EUR][1000 genomes]
rs6792889	0.85[EUR][1000 genomes]
rs6807979	0.85[EUR][1000 genomes]
rs73013102	0.87[EUR][1000 genomes]
rs73872234	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73872242	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73872252	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73872259	0.84[EUR][1000 genomes]
rs73872262	0.82[EUR][1000 genomes]
rs7430349	0.89[EUR][1000 genomes]
rs931159	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877584	chr3:144903957-145833232	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv998876	chr3:144946062-145228614	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv877587	chr3:144949453-145355433	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877598	chr3:145066128-145215363	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv877599	chr3:145066128-145225110	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv877600	chr3:145078609-145215363	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv877601	chr3:145078609-145238544	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3325207	chr3:145093791-145248063	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv877603	chr3:145098107-145260381	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv877604	chr3:145134631-145215363	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv877605	chr3:145134631-145250034	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv460879	chr3:145147420-145215363	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv591934	chr3:145147420-145215363	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3404263	chr3:145205893-145225748	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3360121	chr3:145205929-145225718	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145208800-145220200	Weak transcription	Left Ventricle	heart
2	chr3:145214400-145215600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:145215000-145215400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:145215000-145215600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:145215200-145215600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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