Variant report

Variant	rs1476745
Chromosome Location	chr14:72457218-72457219
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1009017	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs11158920	0.88[JPT][hapmap]
rs11158926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158927	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11620690	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs11622507	0.88[ASN][1000 genomes]
rs11623492	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs11623535	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs11625937	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11627768	0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs11628133	0.88[JPT][hapmap]
rs11628574	0.83[JPT][hapmap]
rs12148043	0.88[JPT][hapmap]
rs12433721	0.88[JPT][hapmap]
rs12897929	0.88[CHB][hapmap];0.88[CHD][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap]
rs17093750	0.83[JPT][hapmap]
rs17105346	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs17105566	0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs17105606	0.88[JPT][hapmap]
rs17105690	0.88[JPT][hapmap]
rs17768361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860104	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs1987722	0.83[ASN][1000 genomes]
rs1987723	0.83[ASN][1000 genomes]
rs2010846	0.83[ASN][1000 genomes]
rs2010850	0.83[ASN][1000 genomes]
rs2052015	0.83[JPT][hapmap]
rs2190864	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs2332705	0.87[ASN][1000 genomes]
rs3784055	0.88[JPT][hapmap]
rs3784056	0.88[JPT][hapmap]
rs3784058	0.88[JPT][hapmap]
rs4243640	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs4350510	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs4354860	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs4899412	0.94[JPT][hapmap]
rs4902958	0.88[JPT][hapmap]
rs4902966	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs60503142	0.88[ASN][1000 genomes]
rs699358	0.83[ASN][1000 genomes]
rs72735952	0.85[ASN][1000 genomes]
rs72735955	0.86[ASN][1000 genomes]
rs72735956	0.86[ASN][1000 genomes]
rs7494103	0.83[JPT][hapmap]
rs8013467	0.94[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1476745	PTGR2	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72456800-72457600	Enhancers	Fetal Muscle Leg	muscle
2	chr14:72457000-72457400	Enhancers	Right Ventricle	heart
3	chr14:72457000-72460200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr14:72457000-72461200	Weak transcription	Fetal Heart	heart
5	chr14:72457200-72457600	Enhancers	Left Ventricle	heart
6	chr14:72457200-72461000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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