Variant report

Variant	rs147709504
Chromosome Location	chr19:52732360-52732361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:52692286..52695844-chr19:52730833..52733280,4	MCF-7	breast:
2	chr19:52730627..52732883-chr19:52789456..52792184,2	K562	blood:
3	chr19:52731463..52733004-chr19:52746080..52748191,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF836-2	chr19:52731708-52732553	NONHSAT067525

Variant related genes	Relation type
ENSG00000105568	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065410	chr19:52103914-52889530	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	596 gene(s)	inside rSNPs	diseases
2	esv3366000	chr19:52491073-52842946	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv1066015	chr19:52502213-52890308	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv544059	chr19:52502213-52890308	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv962989	chr19:52732337-52742183	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52694600-52732800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:52695400-52733200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr19:52696000-52732400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:52696000-52733000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr19:52696200-52732400	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr19:52696200-52732400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr19:52696200-52732400	Strong transcription	Primary B cells from cord blood	blood
8	chr19:52697600-52732400	Strong transcription	Sigmoid Colon	Sigmoid Colon
9	chr19:52697600-52733200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr19:52697800-52732400	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr19:52697800-52732400	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr19:52697800-52732600	Strong transcription	Primary T cells from cord blood	blood
13	chr19:52697800-52733000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr19:52698200-52732400	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr19:52698200-52732400	Strong transcription	HepG2	liver
16	chr19:52698200-52732600	Strong transcription	Fetal Brain Female	brain
17	chr19:52698400-52732400	Strong transcription	Fetal Thymus	thymus
18	chr19:52698800-52732400	Strong transcription	Liver	Liver
19	chr19:52703000-52732600	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr19:52703000-52734600	Strong transcription	Fetal Stomach	stomach
21	chr19:52703200-52732400	Strong transcription	H9 Cell Line	embryonic stem cell
22	chr19:52703200-52732400	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr19:52703200-52732800	Strong transcription	Brain Germinal Matrix	brain
24	chr19:52703200-52733200	Strong transcription	Duodenum Mucosa	Duodenum
25	chr19:52703200-52734000	Strong transcription	Lung	lung
26	chr19:52703600-52733200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr19:52703800-52733200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr19:52704000-52732400	Strong transcription	Brain Cingulate Gyrus	brain
29	chr19:52704000-52733200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr19:52704200-52732400	Strong transcription	NHLF	lung
31	chr19:52704400-52732400	Strong transcription	Muscle Satellite Cultured Cells	--
32	chr19:52704400-52732400	Strong transcription	Adipose Nuclei	Adipose
33	chr19:52704400-52733000	Strong transcription	Colonic Mucosa	Colon
34	chr19:52704400-52733200	Strong transcription	Osteobl	bone
35	chr19:52704800-52732400	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr19:52705000-52732400	Strong transcription	Brain Anterior Caudate	brain
37	chr19:52705000-52733000	Strong transcription	Brain Inferior Temporal Lobe	brain
38	chr19:52705000-52735200	Strong transcription	Stomach Smooth Muscle	stomach
39	chr19:52708000-52732400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr19:52709000-52733200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr19:52709400-52732600	Strong transcription	Spleen	Spleen
42	chr19:52710000-52732400	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr19:52710200-52732400	Strong transcription	Right Ventricle	heart
44	chr19:52710200-52733000	Strong transcription	Skeletal Muscle Male	skeletal muscle
45	chr19:52710800-52732400	Strong transcription	Left Ventricle	heart
46	chr19:52711200-52733000	Strong transcription	Thymus	Thymus
47	chr19:52712400-52732400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr19:52712800-52732400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr19:52712800-52732400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr19:52713000-52733400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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