Variant report

Variant	rs1477961
Chromosome Location	chr8:54418785-54418786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11991614	1.00[CHB][hapmap]
rs11992458	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs11993719	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919215	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16919228	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16919245	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28507351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28636779	0.98[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59216865	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61286708	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6983022	0.88[EUR][1000 genomes]
rs899108	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752674	chr8:54181147-54483747	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54409600-54426600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:54410200-54421600	Weak transcription	Ovary	ovary
3	chr8:54411800-54433400	Weak transcription	Colon Smooth Muscle	Colon
4	chr8:54413200-54421400	Weak transcription	Aorta	Aorta
5	chr8:54416800-54426600	Weak transcription	Right Ventricle	heart
6	chr8:54417000-54419400	Weak transcription	Left Ventricle	heart
7	chr8:54418000-54419200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:54418600-54420200	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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