Variant report

Variant	rs147798789
Chromosome Location	chr6:101019020-101019021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:101017900..101019505-chr6:101022464..101024601,2	K562	blood:
2	chr6:101016964..101018507-chr6:101018894..101020427,2	MCF-7	breast:
3	chr6:101006431..101008504-chr6:101017290..101019362,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv886444	chr6:100961198-101084946	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604263	chr6:100980874-101078718	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv463986	chr6:100995048-101084946	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv604264	chr6:100995048-101084946	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1028016	chr6:101001055-101158822	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv886445	chr6:101004751-101240763	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv886446	chr6:101018032-101084946	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv886447	chr6:101018032-101091434	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv886448	chr6:101018032-101123503	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv886449	chr6:101018032-101147095	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv886450	chr6:101018032-101168137	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv886451	chr6:101018032-101172328	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv886452	chr6:101018032-101192051	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv886453	chr6:101018032-101203051	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100960800-101035000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:100964200-101020000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:100965600-101033600	Weak transcription	Ovary	ovary
4	chr6:100978600-101019400	Weak transcription	HMEC	breast
5	chr6:100988200-101035000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:100988200-101035000	Weak transcription	GM12878-XiMat	blood
7	chr6:100988800-101034200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:101001000-101034000	Weak transcription	Fetal Intestine Large	intestine
9	chr6:101001400-101020000	Weak transcription	Fetal Brain Male	brain
10	chr6:101001600-101034000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:101002000-101033600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:101002400-101027200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:101005000-101023400	Weak transcription	Placenta	Placenta
14	chr6:101005200-101033600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:101006200-101035400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:101007400-101033600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:101008800-101033600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:101009000-101033600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:101009000-101034600	Weak transcription	NH-A	brain
20	chr6:101009000-101035000	Weak transcription	NHDF-Ad	bronchial
21	chr6:101009000-101035200	Weak transcription	Osteobl	bone
22	chr6:101009000-101065600	Weak transcription	NHEK	skin
23	chr6:101010000-101027600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:101011000-101080800	Weak transcription	HepG2	liver
25	chr6:101011400-101027200	Weak transcription	Psoas Muscle	Psoas
26	chr6:101011400-101035000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr6:101011600-101034200	Weak transcription	Pancreas	Pancrea
28	chr6:101012800-101033800	Weak transcription	Adipose Nuclei	Adipose
29	chr6:101014000-101027400	Weak transcription	Fetal Kidney	kidney
30	chr6:101014200-101027200	Weak transcription	Liver	Liver
31	chr6:101014200-101027800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:101014400-101022400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:101014800-101019800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr6:101014800-101024400	Weak transcription	Fetal Stomach	stomach
35	chr6:101014800-101033600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:101015400-101020600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:101015800-101049200	Weak transcription	Esophagus	oesophagus
38	chr6:101016200-101026200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr6:101016400-101065800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr6:101017000-101020400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:101017200-101021400	Weak transcription	Primary B cells from peripheral blood	blood
42	chr6:101017200-101069400	Weak transcription	Fetal Lung	lung
43	chr6:101017600-101020400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:101017600-101034800	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr6:101017800-101020400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:101017800-101020400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:101017800-101021200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:101017800-101024800	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr6:101017800-101035400	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr6:101017800-101069800	Weak transcription	Lung	lung

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