Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11989310	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1600538	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16929381	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16929414	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929425	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16929454	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34116232	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4737608	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4737609	0.94[EUR][1000 genomes]
rs4738995	0.86[EUR][1000 genomes]
rs4738996	0.86[EUR][1000 genomes]
rs4739000	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56074674	0.86[EUR][1000 genomes]
rs56209195	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56254488	0.86[EUR][1000 genomes]
rs6472042	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7004183	0.84[EUR][1000 genomes]
rs7008374	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72653224	0.84[EUR][1000 genomes]
rs769042	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs931130	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890960	chr8:63516962-63629549	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63602600-63602800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:63602600-63602800	Active TSS	Brain Cingulate Gyrus	brain
3	chr8:63602600-63602800	Enhancers	Brain Substantia Nigra	brain
4	chr8:63602600-63602800	Enhancers	Fetal Brain Male	brain
5	chr8:63602600-63602800	Enhancers	Fetal Brain Female	brain
6	chr8:63602600-63602800	Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr8:63602600-63603000	Flanking Active TSS	Fetal Muscle Trunk	muscle
8	chr8:63602600-63603000	Enhancers	Fetal Stomach	stomach
9	chr8:63602600-63603000	Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr8:63602600-63603200	Active TSS	Brain Germinal Matrix	brain
11	chr8:63602600-63603200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr8:63602600-63603200	Active TSS	HSMM	muscle
13	chr8:63602600-63603400	Flanking Active TSS	Fetal Muscle Leg	muscle
14	chr8:63602600-63603600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:63602600-63603600	Active TSS	Brain Angular Gyrus	brain
16	chr8:63602600-63603600	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr8:63602600-63603800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr8:63602600-63603800	Active TSS	HSMMtube	muscle

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