Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:78893702..78896583-chr3:78898373..78900723,2	MCF-7	breast:
2	chr3:78878304..78880959-chr3:78895079..78897544,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12330466	0.88[YRI][hapmap]
rs12330828	0.82[YRI][hapmap]
rs12714473	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1480687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs162870	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs1843786	0.88[CEU][hapmap];0.89[LWK][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.94[YRI][hapmap]
rs28629289	0.85[EUR][1000 genomes]
rs383189	0.83[LWK][hapmap]
rs439325	0.84[CEU][hapmap]
rs7640421	0.88[YRI][hapmap]
rs9309819	0.84[CEU][hapmap];0.82[TSI][hapmap]
rs9309820	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9835958	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9837982	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs9841731	0.88[YRI][hapmap]
rs9861264	0.84[EUR][1000 genomes]
rs9861640	0.85[YRI][hapmap]
rs9863758	0.87[CEU][hapmap]
rs9877603	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs9881587	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78886200-78895800	Weak transcription	NHLF	lung
2	chr3:78887800-78896000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:78889400-78896000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:78889400-78898800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:78889400-78899000	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:78889600-78896200	Weak transcription	A549	lung
7	chr3:78889800-78895800	Weak transcription	Brain Substantia Nigra	brain
8	chr3:78890600-78895800	Weak transcription	Brain Anterior Caudate	brain
9	chr3:78890800-78896000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:78892600-78897600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:78893600-78900000	Enhancers	HepG2	liver
12	chr3:78894800-78895400	Enhancers	Fetal Intestine Small	intestine
13	chr3:78894800-78896000	Enhancers	Fetal Lung	lung
14	chr3:78895000-78895400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:78895000-78896000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:78895000-78896800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:78895000-78897400	Weak transcription	Liver	Liver
18	chr3:78895200-78896400	Weak transcription	Fetal Stomach	stomach

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