Variant report

Variant	rs1482097
Chromosome Location	chr4:86594072-86594073
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86591944..86594677-chr4:86595648..86598100,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10516752	1.00[MEX][hapmap]
rs13150113	1.00[MEX][hapmap]
rs1377206	1.00[MEX][hapmap]
rs1482098	1.00[MEX][hapmap]
rs17010334	1.00[MEX][hapmap]
rs17010622	1.00[MEX][hapmap]
rs17010756	1.00[MEX][hapmap]
rs2869363	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2869382	1.00[MEX][hapmap]
rs2869383	1.00[MEX][hapmap]
rs28711946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3887498	0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4693124	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs6842625	1.00[MEX][hapmap]
rs7668677	0.80[AFR][1000 genomes]
rs7684989	1.00[MEX][hapmap]
rs9993320	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86589000-86601600	Weak transcription	HSMMtube	muscle
2	chr4:86590000-86604600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr4:86591400-86619400	Weak transcription	Pancreas	Pancrea
4	chr4:86592000-86597600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:86592200-86595400	Enhancers	NHDF-Ad	bronchial
6	chr4:86592800-86594600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:86592800-86594800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr4:86593000-86595000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr4:86593000-86595000	Genic enhancers	Primary B cells from cord blood	blood
10	chr4:86593200-86597400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:86593600-86594200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:86593600-86594200	Enhancers	Adipose Nuclei	Adipose
13	chr4:86593600-86594200	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr4:86593600-86594400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr4:86593600-86594400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr4:86593600-86594400	Enhancers	Fetal Muscle Leg	muscle
17	chr4:86593600-86594400	Enhancers	Right Atrium	heart
18	chr4:86593600-86594400	Enhancers	Spleen	Spleen
19	chr4:86593600-86594400	Strong transcription	HSMM	muscle
20	chr4:86593600-86596000	Enhancers	GM12878-XiMat	blood
21	chr4:86593800-86594200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:86593800-86594400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr4:86593800-86594400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr4:86593800-86594400	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr4:86594000-86594200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr4:86594000-86594200	Enhancers	Fetal Thymus	thymus
27	chr4:86594000-86594600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr4:86594000-86594600	Enhancers	Primary hematopoietic stem cells	blood
29	chr4:86594000-86595400	Weak transcription	Fetal Stomach	stomach
30	chr4:86594000-86595600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:86594000-86595600	Enhancers	Primary B cells from peripheral blood	blood
32	chr4:86594000-86596800	Weak transcription	Left Ventricle	heart
33	chr4:86594000-86597800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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