Variant report
| Variant | rs1482459 |
|---|---|
| Chromosome Location | chr6:64593687-64593688 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10944131 | 0.93[ASN][1000 genomes] |
| rs12204149 | 0.93[ASN][1000 genomes] |
| rs12212467 | 0.93[ASN][1000 genomes] |
| rs12660411 | 0.92[ASN][1000 genomes] |
| rs13216525 | 0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.93[JPT][hapmap];0.80[LWK][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap] |
| rs1384324 | 0.93[ASN][1000 genomes] |
| rs1482449 | 0.91[ASN][1000 genomes] |
| rs1482451 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1482460 | 0.92[ASN][1000 genomes] |
| rs1482461 | 0.92[ASN][1000 genomes] |
| rs1482463 | 0.92[ASN][1000 genomes] |
| rs1825209 | 0.92[ASN][1000 genomes] |
| rs1977622 | 0.82[ASN][1000 genomes] |
| rs321498 | 0.92[ASN][1000 genomes] |
| rs321499 | 0.92[ASN][1000 genomes] |
| rs321502 | 0.92[ASN][1000 genomes] |
| rs321503 | 0.92[ASN][1000 genomes] |
| rs3800489 | 0.81[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.80[LWK][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];0.92[YRI][hapmap] |
| rs4710449 | 0.82[ASN][1000 genomes] |
| rs6454470 | 0.92[ASN][1000 genomes] |
| rs6454475 | 0.92[ASN][1000 genomes] |
| rs6454476 | 0.92[ASN][1000 genomes] |
| rs756274 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap] |
| rs7753631 | 0.92[ASN][1000 genomes] |
| rs7762059 | 0.86[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap] |
| rs7768206 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024367 | chr6:64453493-64615908 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1025270 | chr6:64574202-64608983 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv1020226 | chr6:64582008-64793525 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv538271 | chr6:64582008-64793525 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv603376 | chr6:64589465-64771342 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:64593000-64593800 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
| 2 | chr6:64593000-64593800 | Enhancers | GM12878-XiMat | blood |
