Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10510565	0.95[EUR][1000 genomes]
rs11925814	0.88[EUR][1000 genomes]
rs1483839	0.85[EUR][1000 genomes]
rs1564744	0.88[EUR][1000 genomes]
rs17016150	0.84[AMR][1000 genomes]
rs17016182	0.85[EUR][1000 genomes]
rs17016185	0.85[EUR][1000 genomes]
rs17016213	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17016253	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016257	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17016308	0.81[EUR][1000 genomes]
rs17016320	0.81[EUR][1000 genomes]
rs17016328	0.81[EUR][1000 genomes]
rs17016334	0.81[EUR][1000 genomes]
rs17016343	0.81[EUR][1000 genomes]
rs17016356	0.83[EUR][1000 genomes]
rs2086790	0.88[EUR][1000 genomes]
rs56167545	0.81[EUR][1000 genomes]
rs56397774	0.81[EUR][1000 genomes]
rs57064248	0.88[EUR][1000 genomes]
rs59034168	0.83[EUR][1000 genomes]
rs60112210	0.81[EUR][1000 genomes]
rs60519915	0.81[EUR][1000 genomes]
rs60838657	0.81[EUR][1000 genomes]
rs60917922	0.88[EUR][1000 genomes]
rs61165804	0.81[EUR][1000 genomes]
rs61558701	0.81[EUR][1000 genomes]
rs6769438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156056	0.88[EUR][1000 genomes]
rs73156093	0.81[EUR][1000 genomes]
rs73157810	0.81[EUR][1000 genomes]
rs73820454	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25377200-25384000	Weak transcription	Fetal Lung	lung
2	chr3:25378200-25380800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:25379000-25382600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:25379200-25380800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:25380200-25381000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:25380400-25382000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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