Variant report

Variant	rs1486030
Chromosome Location	chr4:81601093-81601094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10033938	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1038530	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1038531	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11940084	0.88[AMR][1000 genomes]
rs12650380	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1352077	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1486021	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1486027	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1601512	0.92[AMR][1000 genomes]
rs1601513	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2132264	0.85[AMR][1000 genomes]
rs2867780	0.85[AMR][1000 genomes]
rs2867782	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs329402	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs329403	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34306570	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34975597	0.85[AMR][1000 genomes]
rs396273	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4146323	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4283653	0.92[AMR][1000 genomes]
rs436807	0.80[EUR][1000 genomes]
rs444023	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs444680	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4693062	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4693510	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4693531	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs544526	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59789768	0.85[AMR][1000 genomes]
rs6535031	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6535040	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6535041	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs72864881	0.90[EUR][1000 genomes]
rs72864895	0.80[EUR][1000 genomes]
rs72874049	0.85[AMR][1000 genomes]
rs72874070	0.82[AMR][1000 genomes]
rs72874077	0.85[AMR][1000 genomes]
rs72874089	0.85[AMR][1000 genomes]
rs72874098	0.85[AMR][1000 genomes]
rs72879935	0.89[EUR][1000 genomes]
rs73829109	0.82[EUR][1000 genomes]
rs7668590	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7675185	0.89[EUR][1000 genomes]
rs7696162	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs923178	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs971728	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002776	chr4:81480374-81802614	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537154	chr4:81480374-81802614	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3518601	chr4:81523238-81831941	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3518602	chr4:81523354-81831976	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3381861	chr4:81587822-81608017	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81599000-81601200	Enhancers	Primary T cells from cord blood	blood
2	chr4:81600200-81601200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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