Variant report

Variant	rs1489842
Chromosome Location	chr10:55367311-55367312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1116926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1489823	1.00[AMR][1000 genomes]
rs1489831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1489841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1844445	0.90[AFR][1000 genomes]
rs1844446	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1994577	1.00[AFR][1000 genomes]
rs2046803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2488570	1.00[AMR][1000 genomes]
rs3120129	1.00[AMR][1000 genomes]
rs351851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs382188	1.00[AMR][1000 genomes]
rs432864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs440002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4935455	1.00[AMR][1000 genomes]
rs6481028	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7086098	1.00[AMR][1000 genomes]
rs7099823	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7100364	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73232463	1.00[AMR][1000 genomes]
rs73232492	1.00[AMR][1000 genomes]
rs825774	1.00[AMR][1000 genomes]
rs825775	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs825776	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs825777	1.00[AMR][1000 genomes]
rs825817	1.00[AMR][1000 genomes]
rs9415289	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2757386	chr10:55357136-55531037	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2759753	chr10:55357136-55586930	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2758220	chr10:55360612-55586930	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1047468	chr10:55361202-55459392	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv550930	chr10:55365419-55395380	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55360800-55367400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr10:55362200-55371400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:55366000-55371200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:55366400-55368200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:55366600-55368200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:55366800-55368000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:55367000-55367400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:55367000-55368000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr10:55367200-55368600	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links