Variant report

Variant	rs149176553
Chromosome Location	chr4:56935446-56935447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3437596	chr4:56934495-56938693	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56916400-56936200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:56922000-56935600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:56923800-56936400	Weak transcription	Fetal Intestine Small	intestine
4	chr4:56923800-56936800	Weak transcription	Fetal Intestine Large	intestine
5	chr4:56926800-56936200	Weak transcription	Fetal Kidney	kidney
6	chr4:56927200-56939800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr4:56931200-56943600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:56934200-56935600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:56934200-56937600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:56934600-56935800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:56934800-56935800	ZNF genes & repeats	Fetal Stomach	stomach
12	chr4:56934800-56936000	ZNF genes & repeats	Brain Germinal Matrix	brain
13	chr4:56934800-56936000	ZNF genes & repeats	Fetal Brain Female	brain
14	chr4:56935000-56936200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:56935000-56938600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr4:56935200-56936000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr4:56935400-56936800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:56935400-56942800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:56935400-56945000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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