Variant report

Variant	rs149222665
Chromosome Location	chr3:119354776-119354777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119326194..119327898-chr3:119353631..119355784,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POPDC2-2	chr3:119354373-119354997	NONHSAT091397

Variant related genes	Relation type
ENSG00000144837	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829695	chr3:119178890-119367996	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1831824	chr3:119263607-119402474	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	esv1796433	chr3:119350324-119360506	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv1804126	chr3:119351398-119360506	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv963354	chr3:119352662-119355854	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv527724	chr3:119353844-119361415	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119340800-119357600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:119341400-119364600	Weak transcription	Liver	Liver
3	chr3:119345200-119357600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:119345800-119355200	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:119347800-119356400	Weak transcription	Fetal Thymus	thymus
6	chr3:119349400-119357600	Weak transcription	Fetal Intestine Small	intestine
7	chr3:119349600-119355000	Weak transcription	Spleen	Spleen
8	chr3:119349600-119357000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:119349800-119355000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:119349800-119356400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:119349800-119356400	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:119349800-119357000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr3:119349800-119378800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:119350000-119354800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:119350000-119354800	Weak transcription	NHDF-Ad	bronchial
16	chr3:119350000-119355000	Weak transcription	NH-A	brain
17	chr3:119350000-119355000	Weak transcription	NHLF	lung
18	chr3:119350000-119355200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:119350400-119354800	Weak transcription	HSMM	muscle
20	chr3:119350400-119355000	Weak transcription	HSMMtube	muscle
21	chr3:119350600-119354800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:119350600-119355000	Weak transcription	Osteobl	bone
23	chr3:119351000-119354800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:119351000-119355000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:119351000-119355000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr3:119351200-119354800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:119351400-119354800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:119351400-119355000	Weak transcription	K562	blood
29	chr3:119351400-119355400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr3:119351600-119355200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr3:119351800-119356400	Weak transcription	Colon Smooth Muscle	Colon
32	chr3:119352000-119355000	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr3:119352000-119355000	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr3:119352000-119357400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr3:119352000-119378600	Weak transcription	Thymus	Thymus
36	chr3:119352600-119367000	Weak transcription	Ovary	ovary
37	chr3:119352800-119356600	Weak transcription	Aorta	Aorta
38	chr3:119353800-119359000	Strong transcription	Stomach Smooth Muscle	stomach
39	chr3:119354000-119356600	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr3:119354000-119358000	Enhancers	Fetal Heart	heart
41	chr3:119354000-119358600	Enhancers	Left Ventricle	heart
42	chr3:119354000-119358800	Enhancers	Placenta	Placenta
43	chr3:119354000-119387600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr3:119354200-119355200	Enhancers	Right Ventricle	heart
45	chr3:119354400-119354800	Enhancers	Lung	lung
46	chr3:119354400-119355000	Strong transcription	Fetal Stomach	stomach
47	chr3:119354400-119355800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr3:119354400-119358400	Enhancers	Adipose Nuclei	Adipose
49	chr3:119354400-119358400	Enhancers	Right Atrium	heart
50	chr3:119354400-119358800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links